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Overview


Off-target Prediction


Background


Assumptions


Establishment




Solution


Algorithm design


The results of off-target assessment

Guide Sequence + PAM BioTech MIT CFD Mismatch
TAGCACCTTAAGCTTACCGC+CGG 95 100 100 [0, 0, 0, 0, 1]
TAAGCTTAAGGTGCTAGCCA+AGG 93 100 100 [0, 0, 0, 0, 4]
CGTCCGCCGTGGCCTTCACA+GGG 74 99 99 [0, 0, 0, 0, 13]
GTCGGCCCCTGTGAAGGCCA+CGG 74 94 96 [0, 0, 0, 1, 32]
GTCGGCCGGCGGTAAGCTTA+AGG 71 99 99 [0, 0, 0, 2, 6]
GGCCCCTGTGAAGGCCACGG+CGG 71 89 96 [0, 0, 0, 2, 57]
CGCCTTGTGGTGTCGGCCGG+CGG 64 93 96 [0, 0, 0, 2, 33]
GCTGGCGTCGGCCCCTGTGA+AGG 62 87 94 [0, 0, 0, 8, 127]
GCGTCCGCCGTGGCCTTCAC+AGG 62 91 96 [0, 0, 0, 2, 54]
GGTGTACTGGGGCGCCGCCG+CGG 60 77 93 [0, 0, 0, 4, 97]
GTCCGCCGTGGCCTTCACAG+GGG 57 92 95 [0, 0, 0, 2, 48]
GGACGCGGGCGTGGTGTACT+GGG 57 90 96 [0, 0, 0, 6, 67]
GCTAGCCAAGGCGCTGGCGT+CGG 54 65 93 [0, 0, 0, 12, 134]
TAAGGTGCTAGCCAAGGCGC+TGG 48 84 94 [0, 0, 0, 2, 35]
GACGCGGGCGTGGTGTACTG+GGG 47 91 96 [0, 0, 1, 6, 52]
CGGACGCGGGCGTGGTGTAC+TGG 41 84 93 [0, 0, 0, 9, 83]
TGTGAAGGCCACGGCGGACG+CGG 41 77 90 [0, 0, 0, 8, 103]
AGGGGCCGACGCCAGCGCCT+TGG 38 66 88 [0, 0, 1, 10, 131]
GTGAAGGCCACGGCGGACGC+GGG 35 69 93 [0, 0, 1, 11, 103]
GGCCACGGCGGACGCGGGCG+TGG 32 19 48 [0, 0, 16, 172, 1352]
TACCGCCGGCCGACACCACA+AGG 31 93 99 [0, 0, 1, 2, 8]
CTGCAGGTCGGCGTCCGCGG+CGG 15 38 80 [0, 1, 3, 43, 456]
CACCACGCCCGCGTCCGCCG+TGG 11 21 78 [0, 3, 1, 41, 362]
(A)
(B)
(C)
BioTech MIT CFD CFD Mismatch
99 100 100 100 [0, 0, 0, 0, 1]
96 100 100 100 [0, 0, 0, 0, 4]
88 100 100 99 [0, 0, 0, 0, 13]
83 99 100 96 [0, 0, 0, 1, 32]
80 99 100 99 [0, 0, 0, 2, 6]
80 98 100 96 [0, 0, 0, 2, 57]
80 98 100 96 [0, 0, 0, 2, 33]
78 98 100 94 [0, 0, 0, 8, 127]
77 98 99 96 [0, 0, 0, 2, 54]
74 98 99 93 [0, 0, 0, 4, 97]

The calculation of the cleavage possibility

Mismatch_Num Max Min Mean Std
0 99.99% 99.99% 99.99% 0.00%
1 99.99% 96.30% 99.32% 0.87%
2 99.99% 1.16% 53.34% 37.03%
3 99.66% 0.00% 9.47% 21.37%
4 67.65% 0.00% 0.34% 2.45%

Reference


For the manuscript, see https://static.igem.wiki/teams/4335/wiki/model-off-target.pdf