parts
PARTS

   Our team designed 15 basic parts and 3 composite parts, totaling 15 parts.
   This year, we designed BBa_K4113022 and BBa_K4113025 to increase the GABA content in longan healing tissue. If you want to see more information about them, you can click on the part number to search!

1 Basic Parts
Name Type Description
BBa_K4113008 Primer DlGAD2-F
BBa_K4113011 Primer DlGAD2-R
BBa_K4113009 Coding DlGAD2
BBa_K4113010 Coding DlGAD5
BBa_K4113012 Primer U626-IDF
BBa_K4113013 Primer DlCaM1-AtU6-1T1R
BBa_K4113014 Coding DlCaM1
BBa_K4113015 Coding DlCaM2
BBa_K4113016 Primer DlGAD5-F
BBa_K4113018 Primer DlCaM2-AtU6-1T1R
BBa_K4113019 Primer DlGAD5-R
BBa_K4113026 Terminator NOS terminator
BBa_K4113027 Promoter CaMV35S Promoter
BBa_K4113020 plasmid pCAMBIA1301
BBa_K4113021 plasmid pCAMBIA1301SN


2 Composite parts
Name Type Description
BBa_K4113028 plasmid pCAMBIA1301SN
BBa_K4113022 plasmid pCOMBIA1301SN-DlGAD2
BBa_K4113025 plasmid pCOMBIA1301SN-DlGAD5

Commonly used binary expression vectors for plant

2.1 Commonly used binary expression vectors for plant——pCAMBIA Vectors

plasmid Basic Skeleton parts1
pCAMBIA1301 plasmid(Kanamycin) parts2
pCAMBIA1301SN plasmid(Kanamycin) parts4
pGW3(Genovo-W-3)
(Source: The New Zealand Institute for Plant and Food Research Limited)
parts9

pCAMBIA1301SN-DlGAD overexpression vector

2.2 pCAMBIA1301SN-DlGAD overexpression vector

process1 process2
Note: LB: the left end of T-DNA region; RB: right end of T-DNA region
Left direction name function
35S promoter Marker gene promoter
Hyg Marker gene promoter
35S polyA Marker gene terminator
Right direction LacZa Enhanced promoter
35S promoter Objective gene promoter
ERF6 Enzymatic cleavage site
35S promoter GUS promoter
NOS reporter gene
GUS gene marker gene
NOS reporter gene

BBa_K4113022
   The constructed recombinant plasmid pCOMBIA1301SN was used as a template for PCR using specific primers for the DlGAD2 gene of Longan. The results were shown in Figure 1, and the size of the PCR amplification product was about 1428 bp, which was consistent with the size of the DlGAD2 gene of Longan. To further verify the accuracy of the insertion site of DlGAD2 gene in Longan, the recombinant plasmid pCOMBIA1301- DlGAD2 was verified by double digestion using restriction endonucleases FastDigest KpnⅠ and FastDigest SalⅠ, and the digested product was imaged by electrophoresis gel, as shown in Figure 3, where the serial number ② represents the DlGAD2 after double digestion which length is 1428bp , and serial number ④ represents the band of pCOMBIA1301SN after double digestion by restriction endonucleases FastDigest KpnⅠ and FastDigest SalⅠ, indicating the correct insertion site of DlGAD2 on the vector. The combined results of PCR and double digestion showed that the DlGAD2 gene was successfully inserted into the polyclonal site of the intermediate expression vector pCOMBIA1301SN, which can be used for subsequent studies. parts6 Figure 1:PCR amplification product of DlGAD2
BBa_K4113025
   The constructed recombinant plasmid pCOMBIA1301SN was used as a template for PCR using primers specific for the DlGAD5 gene of Longan. The results were shown in Figure 2,and the size of the PCR amplification product was about 1473bp, which was consistent with the size of the DlGAD5 gene of Longan. To further verify the accuracy of the insertion site of the DlGAD5 gene in Longan, the recombinant plasmid pCOMBIA1301SN- DlGAD5 was double digested with restriction endonucleases FastDigest KpnⅠ and FastDigest PstⅠ, and the digested product was imaged by electrophoresis gel, as shown in Fig3. The serial number ① represents the band of 1473bp DlGAD5 after double digestion, and serial number ③ represents the band of pCOMBIA1301SN after double digestion with restriction endonuclease FastDigest KpnⅠ and FastDigest PstⅠ, indicating the correct insertion site of DlGAD5 on the vector. The results of combined PCR and double digestion indicated that the DlGAD5 gene was successfully inserted into the polyclonal site of the intermediate expression vector pCOMBIA1301SN and could be used for subsequent studies.
parts7 Figure 2 PCR amplification product of DlGAD5 parts8 Figure 3 Double digestion products

The pGW3 system edits the DlCaM gene

2.3 The pGW3 system edits the DlCaM gene

   When sgRNA was constructed with pGW3 (Kanamycin resistance in bacteria and Hygromycin resistance in plant) vector, the backbone fragment was 15,429 bp after digestion with BsaI, and the gum was recovered and ligated to sgRNA, and the sgRNA primers were synthesized with the addition of the vector complementary to the sticky end sequence. Using the pGW3 recombinant vector we successfully knocked out DlCaM1 and DlCaM2. Plasmid pGW3 was digested with Bsa I: parts10 Figure 4 Enzyme-digested product parts11 Figure5: pGW3-ΔDlCaM1 recombinant vector and pGW3-ΔDlCaM2 recombinant vector Agrobacterium bacteriophage PCR

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