Part Collection

Backbones used for our assemblies:

pSB1A3 that we used for our construction containing a Red Fluorescent Protein

Figure 1: pSB1A3 that we used for our construction containing a Red Fluorescent Protein (RFP). Plasmid used for the composite part: BBa_K4187023 (Dupin A, Simmel FC. Nat Chem. 2018)

pSB1K3 that we used for our construction containing a Red Fluorescent Protein

Figure 2: pSB1K3 that we used for our construction containing a Red Fluorescent Protein (RFP). Plasmid used for the composite part: BBa_K4187023 (Liljeruhm, J., et al., 2018)

Basic part (coding sequence, RBS, terminator, promoter)

Coding sequences:

Coding sequence basic parts

Table 1: Our coding sequence basic parts

Promoters:

Promoter basic parts from previous iGEM teams

Table 2: Our promoter basic parts from previous iGEM teams

Ribosome Binding Site (RBS):

Ribosome Binding Site basic parts

Table 3: Our Ribosome Binding Site basic parts

Terminator:

Terminators basic parts

Table 4: Our terminators basic parts

Composite parts

Composite parts

Table 5: Our composite parts

BBa_K4187020:

Expression of Polylactate depolymerase induced by the ligation of the Light-inducible DNA-binding protein on the Blue-light inducible promoter

Figure 3: Expression of Polylactate depolymerase (PLAase) induced by the ligation of the Light-inducible DNA-binding protein (EL222) on the Blue-light inducible promoter (pBlind) (BioRender) The BBa_K4187020 is composed of the pBlind promoter, the PLAase coding sequence, the strong Ribosome Binding Site.1 (RBS) and the Double Terminator.

BBa_K4187026:

Our composite part BBa_K4187026 in a puC19 plasmid with a Kanamycin resistance marker

Figure 4: Our composite part BBa_K4187026 in a puC19 plasmid with a Kanamycin resistance marker. mtrC is under an arabinose inducible promoter: araBAD with the RBS.1 and the Double Terminator.

Expression of mtrC induced by the ligation of the arabinose on the pBAD promoter

Figure 5: Expression of mtrC induced by the ligation of the arabinose on the pBAD promoter (BioRender). The BBa_K4187026 is composed of the pBAD promoter, the mtrC coding sequence, the strong Ribosome Binding Site.1 (RBS) and the Double Terminator.

BBa_K4187023:

Our composite part BBa_K4187023 in a pSB1K3 plasmid with a Kanamycin resistance marker

Figure 6: Our composite part BBa_K4187023 in a pSB1K3 plasmid with a Kanamycin resistance marker. The polymerization plasmid is composed of the D-Lactate Dehydrogenase composite part (BBa_K4187017), the Propionate CoA-transferase composite part (BBa-K4187018), the Polyhydroxyalkanoate synthase (PHAC1) composite part (BBa_K4187019).

BBa_K4187024:

Our composite part BBa_K4187024 in a pSB1A3 plasmid with an Ampicillin resistance marker

Figure 7: Our composite part BBa_K4187024 in a pSB1A3 plasmid with an Ampicillin resistance marker. The depolymerization plasmid is composed of the Light-inducible DNA-binding protein (EL222) composite part (BBa_K4187020), the Polylactate depolymerase (PLAase) composite part (BBa-K4187021) and is completed with the alpha-amylase (AmyH) composite part (BBa_K4187022).

References

  1. Signaling and differentiation in emulsion-based multi-compartmentalized in vitro gene circuits. Dupin A, Simmel FC. Nat Chem. 2018 Nov 26.
  2. Engineering a palette of eukaryotic chromoproteins for bacterial synthetic biology. Liljeruhm J, Funk SK, Tietscher S, Edlund AD, Jamal S, Wistrand-Yuen P, Dyrhage K, Gynna A, Ivermark K, Lovgren J, Tornblom V, Virtanen A, Lundin ER, Wistrand-Yuen E, Forster AC. J Biol Eng. 2018 May 10;12:8.
  3. Reshma Shetty, 2003. Part:BBA_B0015. Available at:
    http://parts.igem.org/Part:BBa_B0015 (accessed on 10/07/2022)
  4. Imperial 2007, 2007. Part:BBa_I719005. Available at:
    http://parts.igem.org/Part:BBa_I719005 (accessed on 10/07/2022)
  5. Paola Handal, 2017. Part:BBa_K2332002. Available at:
    http://parts.igem.org/Part:BBa_K2332002 (accessed on 10/07/2022)
  6. Paola Handal, 2017. Part: BBa_K2332004. Available at:
    http://parts.igem.org/Part:BBa_K2332004 (accessed on 10/07/2022)
  7. Vinay S Mahajan, 2003. Part: BBa_B0030. Available at:
    http://parts.igem.org/Part:BBa_B0030 (accessed on 10/07/2022)