Proof of Concept

Based on the Anderson Promoter Library and the Rackham RBS library, we believed that using the understanding of the 5'UTR and it's working we could synthesize a library of it that gives us a range of expression values. This library can be used and taken forward by anyone. You need to use BBrickIt v.2 developed by us to BioBrick your desired 5'UTR from our collection according to RFC[10] standards. The BBrickIt v.2 is open-source and available on our software page. You can use online tools to make your reverse oligo and forward strands. These can be ordered from companies like IDT. Once you have your oligos, you need to construct a double stranded 5'UTR. This is available in our Protocol attached on the Wiki. We are further pursuing this and taking it forward to the Biotechnology industry. The variations received in the expression values ratifies is in sync with our experimental design and expectations giving a valid proof of concept. This is our contribution to the iGEM Registry.



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Links Name Symbol Comparative Performance in DH5alpha strain Comparative Performance in BL21(DE3) strain Sequence
http://parts.igem.org/Part:BBa_K4303015 BBa_K4303015 ompA 0.8865 0.6357 CGCCAGGGGTGCTCGGCATAAGCCGAAGATATCGGTAGAGTTAATATTGAGCAGATCCCCCGGTGAAGGATTTAACCGTGTTATCTCGTTGGAGATATTCATGGCGTATTTTGGATGATAACGAGGCGCAAAAA
http://parts.igem.org/Part:BBa_K4303016 BBa_K4303016 mopB 0.3658 0.2928 ACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCA
http://parts.igem.org/Part:BBa_K4303017 BBa_K4303017 CspF 1.1638 0.6922 GGAATTTTT
http://parts.igem.org/Part:BBa_K4303007 BBa_K4303007 CspH 0.2438 0.4194 GCAGCGCAGTATTTTCAGTAAGGAATTTGT
http://parts.igem.org/Part:BBa_K4303008 BBa_K4303008 syn2D 0.0831 0.1795 AGCCAGGGGTGCTCGGCATAAGCCGAAGATATCGGTAGAGTTAATATTGAGCAGATCCCCCGGTCGTATTTTGGATGACTAGAGAAAGAGGAGAAA
http://parts.igem.org/Part:BBa_K4303009 BBa_K4303009 syn2e 0.0160 0.0263 AACGTCGACTTATCTCGAGTGAGATATTGTTGACGGTTACCGTATTTTCTAGAGAAAGAGGAGAAA
http://parts.igem.org/Part:BBa_K4303011 BBa_K4303011 syn2h 0.0948 0.1602 AACGTCGACTTATCTCGAGACTGCAGTTCAATAGAGATATTGTTGACGGTACCGTATTTTCGTATTTTGGATGACTAGAGAAAGAGGAGAAA
http://parts.igem.org/Part:BBa_K4303012 BBa_K4303012 U9 0.1926 0.3025 GGTACATTAGAAAGGAGGAATGTACC
http://parts.igem.org/Part:BBa_K4303013 BBa_K4303013 U10 0.1765 0.2911 GTACATTAGAAAGGAGGAATGTACC
http://parts.igem.org/Part:BBa_K4303014 BBa_K4303014 U13 0.0816 0.1022 GTGATTAGAAAGGAGGAATGTACA
http://parts.igem.org/Part:BBa_K4303006 BBa_K4303006 B1016 0.6418 1.1264 ACTTTTCTTTGCATAGATTGACTCAGAAAAACGTTTAAGGGTGGGTGGC
http://parts.igem.org/Part:BBa_K4303005 BBa_K4303005 yeiG 1.0177 1.1571 ACAACACAACAAGGAGCCACGC
http://parts.igem.org/Part:BBa_K4303003 BBa_K4303003 ynfA 0.8817 1.2123 ATACATGATGTCAATAAGAGACAAAG
http://parts.igem.org/Part:BBa_K4303002 BBa_K4303002 ahpC 0.9372 1.1641 ATCGAAAACACGGAGGAAGTATAG
http://parts.igem.org/Part:BBa_K4303001 BBa_K4303001 yhjT 0.8341 0.9736 AGACAAAATGGTGAC
http://parts.igem.org/Part:BBa_K4303000 BBa_K4303000 sfsA 1.1392 1.0330 GCGCTAACGCAATAACAAGGATTGTCGCA
http://parts.igem.org/Part:BBa_K4303018 BBa_K4303018 SDM17 1.0323 0.2794 GGGATTTTT
http://parts.igem.org/Part:BBa_K4303019 BBa_K4303019 SDM2 0.9995 0.6127 GGAGTTTTT
http://parts.igem.org/Part:BBa_K4303020 BBa_K4303020 SDM3 0.9501 0.3737 GGAATATTT
http://parts.igem.org/Part:BBa_K4303021 BBa_K4303021 SDM23 1.1571 0.5179 GGAATTTTA
http://parts.igem.org/Part:BBa_K4303022 BBa_K4303022 SDM5 1.1293 0.5208 GGAATTTTC
http://parts.igem.org/Part:BBa_K4303023 BBa_K4303023 SDM19 1.0667 0.6004 GTAATTTTT
http://parts.igem.org/Part:BBa_K4303024 BBa_K4303024 SDM10 1.2081 0.4340 GGAAGTTTT
http://parts.igem.org/Part:BBa_K4303026 BBa_K4303026 SDM27 0.9891 0.6213 GGAATTTCT
http://parts.igem.org/Part:BBa_K4303027 BBa_K4303027 SDM26 1.0168 0.4426 GGACTTTTT
http://parts.igem.org/Part:BBa_K4303028 BBa_K4303028 SDM9 0.9329 0.7207 GGAACTTTT
http://parts.igem.org/Part:BBa_K4303029 BBa_K4303029 katE 0.1053 0.1374 TTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCA
http://parts.igem.org/Part:BBa_K4303030 BBa_K4303030 Syn2F 0.5468 0.3400 AACGTCGACTTATCTCGAGACTGCAGTTCAATAGAGATATTGTTGACGGTACCGTATTTTCTAGAGAAAGAGGAGAAA
http://parts.igem.org/Part:BBa_K4303031 BBa_K4303031 wrbA 0.1963 0.2703 AGTGGTAGCGAATCGCTACGGAATAGAGATAACACGAGGAGTGGTTAGAA