Notebook

Arya's Literature Search




Karanveer's Literature Search




Shaurya's Literature Search




Taha's Literature Search




Protocol




References


  1. Viegas, Sandra C., Patrícia Apura, Esteban Martínez-García, Víctor de Lorenzo, and Cecília M. Arraiano. "Modulating heterologous gene expression with portable mRNA-stabilizing 5′-UTR sequences." ACS Synthetic Biology 7, no. 9 (2018): 2177-2188.
  2. Xiao, Jun, Bing Peng, Zhaowei Su, Ankun Liu, Yajing Hu, Christopher T. Nomura, Shouwen Chen, and Qin Wang. "Facilitating protein expression with portable 5′-UTR secondary structures in Bacillus licheniformis." ACS Synthetic Biology 9, no. 5 (2020): 1051-1058.
  3. Pesole, Graziano, Flavio Mignone, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, and Sabino Liuni. "Structural and functional features of eukaryotic mRNA untranslated regions." Gene 276, no. 1-2 (2001): 73-81
  4. Kozak, Marilyn. "Initiation of translation in prokaryotes and eukaryotes." Gene 234, no. 2 (1999): 187-208.
  5. Chiaruttini, Claude, and Maude Guillier. "On the role of mRNA secondary structure in bacterial translation." Wiley Interdisciplinary Reviews: RNA 11, no. 3 (2020): e1579
  6. Hansen, Michael J., Li‐How Chen, Mariena LS Fejzo, and Joel G. Beiasco. "The ompA 5′ untranslated region impedes a major pathway for mRNA degradation in Escherichia coli." Molecular microbiology 12, no. 5 (1994): 707-716.
  7. Salis, Howard M., Ethan A. Mirsky, and Christopher A. Voigt. "Automated design of synthetic ribosome binding sites to control protein expression." Nature biotechnology 27, no. 10 (2009): 946-950.
  8. Cetnar, Daniel P., and Howard M. Salis. "Systematic quantification of sequence and structural determinants controlling mRNA stability in bacterial operons." ACS Synthetic Biology 10, no. 2 (2021): 318-332.
  9. Reis, Alexander C., and Howard M. Salis. "An automated model test system for systematic development and improvement of gene expression models." ACS synthetic biology 9, no. 11 (2020): 3145-3156.
  10. Salis, Howard M. "The ribosome binding site calculator." In Methods in enzymology, vol. 498, pp. 19-42. Academic Press, 2011.
  11. ARNOLD, TODD E., JEANNE YU, and JOEL G. BELASCO. "mRNA stabilization by the ompA 5′ untranslated region: two protective elements hinder distinct pathways for mRNA degradation." Rna 4, no. 3 (1998): 319-330.
  12. Nahvi, Ali, Narasimhan Sudarsan, Margaret S. Ebert, Xiang Zou, Kenneth L. Brown, and Ronald R. Breaker. "Genetic control by a metabolite binding mRNA." Chemistry & biology 9, no. 9 (2002): 1043-1049.
  13. Balzer Le, Simone, Ingerid Onsager, Jon Andreas Lorentzen, and Rahmi Lale. "Dual UTR-A novel 5′ untranslated region design for synthetic biology applications." Synthetic Biology 5, no. 1 (2020): ysaa006.
  14. Jiang, Weining, Li Fang, and Masayori Inouye. "The role of the 5'-end untranslated region of the mRNA for CspA, the major cold-shock protein of Escherichia coli, in cold-shock adaptation." Journal of bacteriology 178, no. 16 (1996): 4919-4925.
  15. Bernstein, Jonathan A., Arkady B. Khodursky, Pei-Hsun Lin, Sue Lin-Chao, and Stanley N. Cohen. "Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays." Proceedings of the National Academy of Sciences 99, no. 15 (2002): 9697-9702.
  16. De Lay, Nicholas, Daniel J. Schu, and Susan Gottesman. "Bacterial small RNA-based negative regulation: Hfq and its accomplices." Journal of Biological Chemistry 288, no. 12 (2013): 7996-8003.
  17. Hui, Monica P., Patricia L. Foley, and Joel G. Belasco. "Messenger RNA degradation in bacterial cells." Annual review of genetics 48 (2014): 537-559.
  18. Fröhlich, Kathrin S., and Jörg Vogel. "Activation of gene expression by small RNA." Current opinion in microbiology 12, no. 6 (2009): 674-682.