This years, we designed, built and characterized a set of parts. They were consisted of different parts collection and played different roles in different section of our parts. All the new parts had been submitted to The iGEM Parts Registry following the BioBricks assembly standard. On this page, we gave a brief description of some of our parts and we divided them into several sections according to the modules they worked in our project. For more detailed information about our parts, we highly recommend you to visit the corresponding parts page on The iGEM Parts Registry or turn to the Design and Engineering page of our wiki.


Name Length(bp) Type Function and description Designer
BBa_K4202004 837 Coding TSLV-BS-CA Junyi Liu
BBa_K4202008 777 Coding Amorphous Calcium Carbonate Binding Protein(ACCBP)(with signal peptide) Hongying Lin
BBa_K4202009 681 Coding Amorphous Calcium Carbonate Binding Protein(ACCBP)(without signal peptite) Hongying Lin
BBa_K4202010 633 Coding Amorphous Calcium Carbonate Binding Protein(ACCBP)(without the 16 amino acids at N terminus) Hongying Lin
BBa_K4202002 786 Coding A fusion protein of mRFP and a short peptide named SpyTag Zihang Ye
BBa_K4202003 1110 Coding A fusion protein of mRFP and a engineered protein named SpyCatcher Zihang Ye
BBa_K4202006 954 Coding A fusion protein of Hag and SpyTag Zihang Ye
BBa_K4202015 771 Coding A fusion protein of EutM and SpyCatcher , and it`s used for the bio-scafford Yuyan Su
BBa_K4202007 6709 Generator Subtilisin production module Liaoliao Gao
BBa_K4202001 339 Coding mazF coding sequence, a component of our kill swich Zhijian Yan
BBa_K4202046 249 Coding mazE(codon optimized) Zhijian Yan
BBa_K4202020 191 DNA leader RNA of PsacB Yibing Han
BBa_K4202020 19 DNA space sequence between PsacB leader RNA Yibing Han
BBa_K4202024 458 Regulatory PsacB-spoVG RBS for Bacillus subtilis Yibing Han
BBa_K4202025 459 Regulatory Pveg-1x leader RNA for Bacillus subtilis Jiachen Li
BBa_K4202026 669 Regulatory Pveg-2x leader RNA for Bacillus subtilis Jiachen Li
BBa_K4202027 879 Regulatory Pveg-3x leader RNA for Bacillus subtilis Jiachen Li
BBa_K4202028 1299 Regulatory Pveg-5x leader RNA for Bacillus subtilis Jiachen Li
BBa_K4202029 1186 Generator PsacB-spoVG RBS-GFP for Bacillus subtilis Yibing Han
BBa_K4202030 1172 Generator PsacB-spoVG RBS-mRFP for Bacillus subtilis Yibing Han
BBa_K4202031 1145 Generator PsacB-spoVG RBS-firefly luciferase for Bacillus subtilis Yibing Han
BBa_K4202032 982 Generator PsacB-spoVG RBS-Nano luciferase for Bacillus subtilis Yibing Han
BBa_K4202033 1187 Generator Pveg-1x leader RNA-spoVG RBS-GFP for Bacillus subtilis Zhijian Yan
BBa_K4202034 1397 Generator Pveg-2x leader RNA-spoVG RBS-GFP for Bacillus subtilis Zhijian Yan
BBa_K4202035 1607 Generator Pveg-3x leader RNA-spoVG RBS-GFP for Bacillus subtilis Zhijian Yan
BBa_K4202036 2027 Generator Pveg-5x leader RNA-spoVG RBS-GFP for Bacillus subtilis Zhijian Yan
BBa_K4202037 1146 Generator Pveg-1x leader RNA-spoVG RBS-firefly luciferase for Bacillus subtilis Zhuoyun Ren
BBa_K4202038 1356 Generator Pveg-2x leader RNA-spoVG RBS-firefly luciferase for Bacillus subtilis Zhuoyun Ren
BBa_K4202039 1566 Generator Pveg-3x leader RNA-spoVG RBS-firefly luciferase for Bacillus subtilis Zhuoyun Ren
BBa_K4202040 1986 Generator Pveg-5x leader RNA-spoVG RBS-firefly luciferase for Bacillus subtilis Zhuoyun Ren
BBa_K4202041 983 Generator Pveg-1x leader RNA-spoVG RBS-Nano luciferase for Bacillus subtilis Yibing Han
BBa_K4202042 1193 Generator Pveg-2x leader RNA-spoVG RBS-Nano luciferase for Bacillus subtilis Yibing Han
BBa_K4202043 1403 Generator Pveg-3x leader RNA-spoVG RBS-Nano luciferase for Bacillus subtilis Yibing Han
BBa_K4202044 1823 Generator Pveg-5x leader RNA-spoVG RBS-Nano luciferase for Bacillus subtilis Yibing Han
BBa_K4202045 757 Generator PsacB-mazE-mazF(codon optimized) for Bacillus subtilis Zhijian Yan
BBa_K4202016 4870 Plasmid A Escherichia coli-Bacillus subtilis shuttle vector Yuyan Su
BBa_K4202018 5364 Plasmid A expression vector for the protein expression in Bacillus subtilis. Yuyan Su

Improved PsacB promoter


We had made improvement on part BBa_K4043004. The original parts was the endogenous promoter of B. subtilis that can respond to the sucrose concentration in the medium. We replaced its constitutive promoter with the Pveg promoter and repeat the regulatory sequence for 1, 2, 3,and 5 times. By changing the constitutive promoter and multiplying the regulatory sequence , we are able to improve the degree of induction and make the induction more stable at most growth conditions (although maximally during exponential growth). You can find more information about our brick in the Registry pages of BBa_K4202025, BBa_K4202026, BBa_K4202027, and BBa_K4202028.

Vector


BBa_K4202016 is the shuttle vector(pHY-300-PLK) used in our project.

Calcium Carbonate Production Module


BBa_K4202004, a codon-optimized sequence encoding carbonic anhydrase, was used to enhance the expression of carbonic anhydrase in Bacillus subtilis to enhance the production of calcium carbonate and biomineralization. However, the characterization results showed that the new part did not enhance the biomineralization effect compared to the original part (BBa_K2232000), but rather weakened the effect.

BBa_K4202008 is the coding sequence of Amorphous Calcium Carbonate Binding Protein(ACCBP) with signal peptide and BBa_K4202009 is the coding sequence of ACCBP without signal peptide. BBa_K4202010 encoded the shorter version of ACCBP with the absence of 16 amino acids at N terminus.

Biological scaffold Module


BBa_K4202002 and BBa_K4202003 encoded mRFP:SpyTag fusion protein and mRFP:SpyCatcher fusion protein, which were used to verify the combination of SpyTag and SpyCatcher. BBa_K4202006 and BBa_K4202015 are proteins used in the bio-scafford which encoded the Hag:SpyTag and EutM:SpyCatcher fusion protein, respectively.

Quorum Sensing Module


BBa_K4202007 is a composite part, consisting of a oxygen-limitation induced promoter, RBS, and a gene cluster composed of spaBCTS. This part is used to induce the expression of subtilisin in oxygen-limitation environment deep in the crack to activate the expression of genes downstream of the chymotrypsin-inducible promoter.

Biosafety Module


BBa_K4202045 is the coding sequence of our kill switch used in the suicide of our engineered bacteria.BBa_K4202001 and BBa_K4202046 are codon optimized sequence that coding mazF-mazF toxin-antitoxin system. They worked together in the kill switch of our engineered bacteria. BBa_K4202019 and BBa_K4202020 are the basic parts involved in the construction of the engineered sucrose-sensitive promoter. BBa_K4202025, BBa_K4202026, BBa_K4202027, and BBa_K4202028 are our engineered sucrose-sensitive promoters which were more sensitive to the low concentration of sucrose. Other parts are the generator we used to characterize the original part (BBa_K4202029, BBa_K4202030, BBa_K4202031, and BBa_K4202032) and the improved part (BBa_K4202033, BBa_K4202034, BBa_K4202035, BBa_K4202036, BBa_K4202037, BBa_K4202038, BBa_K4202039, BBa_K4202040, BBa_K4202041, BBa_K4202042, BBa_K4202043, and BBa_K4202044).