xcLeigh

        Contributions

BBa_I732005: Description of the structure of E.coli beta-galactosidase

The β-galactosidase tetramer (Fig. 1) is comprised of four polypeptide chains, labeled A–D, each of 1023 amino acids.[1] Each 1023-amino-acid monomer is made up of five domains, 1–5, which are respectively colored blue, green, yellow, cyan and red in Fig. 1. Domain 3 has an α/β or ‘TIM’ barrel structure with the active site located at the C-terminal end of the barrel.[2] Both Mg2+ and Na+ are required for maximal activity of β-galactosidase.[3]

Fig.1 | View of the β-galactosidase tetramer looking down one of the two-fold axes. Coloring is by domain: complementation peptide, orange; Domain 1, blue; Domain 2, green; Domain 3, yellow; Domain 4, cyan; Domain 5, red. Lighter and darker shades of a given color are used to distinguish the same domain in different subunits. The metal cations in each of the four active sites are shown as spheres: Na+, green; Mg++, blue. [2]

BBa_K3196036: Advantages of AOX1 promoter

AOX1 promoter is highly repressed in cells grown on glucose, glycerol, and most other carbon sources, but it is strongly induced by methanol.[4-7] Expression of AOX1 is tightly regulated at the transcriptional level [8] and appears to be controlled by both repression/derepression and induction mechanisms (Fig. 2).[9]

Fig.2 | Specific AOX activity during the transition phase in four P. pastoris high cell density fed-batch cultivations.[9]


Besides, for P. pastoris, being an obligate aerobe when growing on methanol does not switch its metabolism under oxygen-limiting conditions as S. cereVisiae and other facultatively aerobic organisms do. This makes it possible to run processes to high cell density also under oxygen limitation.[10-12]

References

[1] Matthews, Brian W. "The structure of E. coli β-galactosidase." Comptes rendus biologies 328.6 (2005): 549-556.
[2] D.H. Juers, R.H. Jacobson, D. Wigley, X.-J. Zhang, R.E. Hu- ber, D.E. Tronrud, B.W. Matthews, High resolution refine- ment of β-galactosidase in a new crystal form reveals mul- tiple metal-binding sites and provides a structural basis for α-complementation, Protein Sci. 9 (2000) 1685–1699.
[3] K. Wallenfels, R. Weil, in: β-Galactosidase, third ed., in: The Enzymes, vol. 7, Academic Press, London, 1972, pp. 617–663.
[4] Cereghino, G. P. L.; Cereghino, J. L.; Ilgen, C.; Cregg, J. M. Production of recombinant proteins in fermenter cultures of the yeast Pichia pastoris. Curr. Opin. Biotechnol. 2002, 13, 329-332.
[5] Ellis, S. B.; Brust, P. F.; Koutz, P. J.; Waters, A. F.; Harpold, M. M.; Gingeras, T. R. Isolation of alcohol oxidase and two other methanol regulatable genes from the yeast Pichia pastoris. Mol. Cell. Biol. 1985, 5, 1111-1121.
[6] Tschopp, J. F.; Brust, P. F.; Cregg, J. M.; Stillman, C. A.; Gingeras, T. R. Expression of the lacZ gene from two methanol-regulated promoters in Pichia pastoris. Nucleic Acids Res. 1987, 15, 3859-3876.
[7] Cregg, J. M.; Madden, K. R. Development of yeast trnsformation systems and construction of methanol-utilization-defective mutants of Pichia pastoris by gene disruption. Biol. Res. Ind. Yeasts 1988, 2, 1-18.
[8] Couderec, R.; Baretti, J. Oxidation of methanol by the yeast Pichia pastoris. Purification and properties of alcohol oxidase. Agric. Biol. Chem. 1980, 44, 2279-2289.
[9] Jahic, M. Process techniques for production of recombinant proteins with Pichia pastoris. Ph.D. thesis, Stockholm, 2003. ISBN 91-7283.-5222-2., pp 1-123.
[10] Jahic, M.; Rotticci-Mulder, J. C.; Martinelle, M.; Hult, K.; Enfors, S. O. Modeling of growth and energy metabolism of Pichia pastoris producing a fusion protein. Bioprocess Biosyst. Eng. 2002, 24, 385- 393.
[11] Charoenrat, T.; Ketudat-Cairns, M.; Stendahl-Andersen, H.; Jahic, M.; Enfors, S. O. Oxygen-limited fed-batch process: An alternative control for Pichia pastoris recombinant protein processes. Bioprocess Biosyst. Eng. 2005, 27, 399-406.
[12] Trentmann, O.; Khatri, N. K.; Hoffmann, F. Reduced oxygen supply increases process stability and product yield with recombinant Pichia pastoris. Biotechnol. Prog. 2004, 20, 1766-1775.