Our partnership begins…
Our team has begun a strong partnership with team NYCU_Taipei. Through
months of communication and planning, we created a bond that propels both
teams to progress more efficiently and effectively.
Virtual Meet-up
Since both of our teams would like to exchange our project ideas, we
scheduled a virtual meet-up of which we got inspired and decided to have a
long-term partnership.
Our first collaboration came into place when both teams presented their
project. Team NYCU_Taipei shared their project about SsrA degradation tags
to reduce the half-life of fluorescent proteins. Further, we extended
in-depth discussions about using fluorescence sensors as tags to increase
accuracy in indicating essential time points within the bacterial growth
curve. Through the questions they asked, we learned the underlying
problems and potential methods to improve the efficacy of the polyP
sensors. Aiming to gain more insights and communication, both teams agreed
to collaborate on the experimental aspect. We hope our partnership will
help both teams to yield better perceptions to solve our target issues.
Fig. 1 Team NYCU_Taipei was presenting their project: E. Color!
Fig. 2 The photo we took at the end of the meet-up.
Experimental Collaborations
After a series of communication and task delegations, team NYCU_Taipei and
our team started our collaboration on experiments in July. Both teams
benefitted from the discussion by adopting ideas of experiments and design
contributed by each other to one’s project.
Phase I
Team NYCU_Taipei shared the idea of using the SsrA tag (degradation tag)
to improve the efficiency expression of fluorescence protein in polyP
sensor plasmids; therefore, our team re-designed and generated the polyP
sensor version II, flanking the gene sequence of mCherry fluorescent
protein with a C-terminal SsrA tag. For more information on the design and
engineering of the polyP sensor, please visit the polyP sensor section of
the
Engineering Success page
.
Phase II
Our team designed and built an AsPhoU vector using a plasmid-compatible
vector used by team NYCU_Taipei. By transforming our vector into the
engineered bacteria generated by the NYCU_Taipei team, they could test the
application of their bacteria. The phase-sensitive fluorescent proteins
produced by the bacteria could assist in demonstrating the activity of
AsPhoU on the bacteria's growth, therefore, proving the real-life
application value of the NYCU_Taipei project in research fields.
Implementation Collaborations
Our team and team NYCU_Taipei collaborated on the design of our
implementation devices. As both teams used the sensing and analysis of
fluorescent signals, we discussed the technical aspect for the design of
Arduino chips. Moreover, we exchanged ideas on the design of filtering
devices, including the material and pore size that could help reach the
highest efficiency and lowest biosafety risks.
Podcast: E. Color!
As both teams valued the importance of raising public awareness, our team
invited Team NTCU_Taipei to record an episode on our human practice
project, the podcast channel Eutro in Vitro. This episode was named after
their project, E. Color! The term “Color” comes from their approach to
expressing the E. Coli population, using fluorescent proteins with
different colors to make E.Coli observed easily. Our conversation began
with their goal to improve the present growth status measurement of E.
coli, extending to environmental and clinical applications. In this
collaboration, we hope to let more people notice their efforts and spread
public awareness through our podcast channel.
Fig. 3 Podcast episode: E. Color!
Finalization
In the last stage of our partnership, we held calls and in-person meetings
to go through our collaborations in wet lab and human practice. We also
focused on the discussions about the future goals and the market position
of our projects. Finally, we confirmed the details in the partnership
criteria of the competition.