Results
1. The pET28a-PKC, pET28a-xynA, pET28a-CcxynA, pET28a-xyl3A (Escherichia coli)
1.1 Construction of the expression plasmids
We design four plasmids: The DNA sequences of PKC, xynA, CcxynA, and xyl3A were inserted into the pET-28a (+)
vector, respectively. In order to build our plasmids, we let the synthetic company synthesize two target gene
fragments, PKC and xynA integrate it into the pUC57 vector. And the target gene fragments CcxynA and xynl3A
integrate them into the pET28a vector.
The certificate of synthesize analysis are as follows:
The certificate of synthesize analysis are as follows:
Certificate of Analysis of pUC57-PKC
Certificate of Analysis of pUC57-xynA
Certificate of Analysis of pET28a-CcxynA
Certificate of Analysis of pET28a-xynl3A
1.1.1 pET28a-PKC
We amplify PKC by PCR, double-enzyme digestion, and inserted into the NheI and HindIII site of pET28a (+) carrier,
respectively, to obtain the plasmids pET28a-PKC. Then the pET28a-PKC transform into DH5α, the colony PCR
identification results show that the construction of pET28a-PKC is successful (Figure 1).
Figure 1. The PCR identification result of pET28a-PKC
M:2000marker
1.pET28a-xynA (DH5α)
2.pET28a-xynA (DH5α)
3.pET28a-PKC (DH5α)
M:2000marker
1.pET28a-xynA (DH5α)
2.pET28a-xynA (DH5α)
3.pET28a-PKC (DH5α)
We send the constructed recombinant plasmid to a sequencing company for sequencing. The returned sequencing
comparison results showed that there were no mutations in the ORF region (Figure 2), and the plasmidpET28a-PKC was
successfully constructed.
Figure 2. The sequencing blast results of the plasmid pET28a-PKC.
The plasmid pET28a-PKC was extracted from DH5α, and transformed it into BL21(DE3). The colony PCR identification
results showed that it was successful (Figure 3).
Figure 3. The PCR identification result of pET28a-PKC
1.1.2 pET28a-xynA
We amplify xynA by PCR, double-enzyme digestion, and inserted into the XbaI and BamHI site of pET28a (+) carrier, to
obtain the plasmids pET28a-xynA. Then the pET28a-xynA transform into DH5α, the colony PCR identification results
show that the construction of pET28a-xynA is successful (Figure 4).
Figure 4. The PCR identification result of pET28a-xynA (DH5α).
We send the constructed recombinant plasmid to a sequencing company for sequencing. The returned sequencing
comparison results showed that there were no mutations in the ORF region (Figure 5), and the plasmid pET28a-xynA was
successfully constructed.
Figure 5. The sequencing blast results of the plasmid pET28a-xynA
The plasmid pET28a-xynA was extracted from DH5α, and transformed into BL21(DE3). The PCR identification results
showed that the plasmid pET28a-xynA was successful (Figure 6).
Figure 6. The PCR identification result of pET28a-xynA BL21(DE3).
1.1.3 pET28a-CcxynA
Because the gene synthesis company delivered a tube of plasmid, we transformed the pET28a-CcxynA into E.coli
BL21(DE3) for expressing proteins. The PCR identification results showed that the transformation of plasmid
pET28a-CcxynA was successful.
Figure 7. The PCR identification result of pET28a-CcxynA.
1.1.4 pET28a-xyl3A
As a result, we can find that when the length of inserted gene is around 3.5k, we still achieved gene-editing with
casposons. What’s more, as the length of the inserted gene increased, the number of colonies decreased. However,
casposons is still an excellent tool we could use in future research for gene editing.
e) Sanger sequencing to amplify the recombinant plasmids
We transformed the pET28a-xyl3A into E.coli DH5α for amplification. Next, the plasmid pET28a-xynA was extracted from
DH5α, then transformed into BL21(DE3). The PCR identification results showed that the transformation of plasmid
pET28a-xyl3A was successful (Figure 8).
Figure 8. The PCR identification result of pET28a-xyl3A .
1.2 Protein expression and purification
In order to obtain the four proteins(PKC, xynA, CcxynA, xyl3A), we transferred the recombinant plasmids into E.coli
BL21(DE3), expanded the culture in the LB medium, and added IPTG to induce protein expression when the OD600 reached
0.3-0.5. After overnight induction and culture, we collected the cells and ultrasonic fragmentation of cells to
release the intracellular proteins. Next, we used nickel column purification to purify the protein we wanted.
At this point, we obtained the four proteins solutions we wanted.
At this point, we obtained the four proteins solutions we wanted.
Figure 9. The SDS-PAGE result of the four proteins
M:180KD marker
S:Soluble lysate
P:Precipitation
E:Elution
M:180KD marker
S:Soluble lysate
P:Precipitation
E:Elution
The molecular weights of xynA, PKC, xyl3A, and CCxynA were 22.87 KD and 48.27 KD, respectively. 84.93KD and 57.0KD;
referring to the marker in Figure 1, we found the four proteins (PKC, xynA, CcxynA, xyl3A) in lane S, indicating
that they were successfully expressed in E. coli BL21 (DE3). The four proteins (PKC, xynA, CcxynA, xyl3A) were also
found in lane P, possibly due to the inactivation of a small number of proteins.
1.3 Test of enzyme activity
Determination of reducing the sugar by DNS method. The absorbance OD540 value of the four purified enzyme solutions
(xynA, PKC, xyl3A, and ccxynA) was measured after color reaction with DNS. The activity of the enzyme can be
converted by the amount of sugar consumed and the working time.
Table 1. Enzyme activity of four solutions (xynA, PKC, xyl3A, and ccxynA)
Table 1. Enzyme activity of four solutions (xynA, PKC, xyl3A, and ccxynA)
Four enzyme solutions | Enzyme activity(U/mL) |
---|---|
xyl3A | 0.302713345 |
PKC | 0.267273734 |
ccxynA | 0.534383396 |
xynA | 0.139789577 |
Figure 10. Enzyme activity of four solutions (xynA, PKC, xyl3A, and ccxynA)
The results showed that the activity of ccxynA enzyme is the highest activity of the four enzymes. The enzyme
activity of xyl3A is higher than that of xynA and PKC. The results indicated that all four proteins were
successfully expressed,and the enzyme activity of four solutions (xynA, PKC, xyl3A, and ccxynA) was active. It
indicated that all four proteins were successfully expressed. According to the different activity values of four
enzymes, we can adopt the strategy of multi-enzyme synergistic degradation to accelerate the degradation rate of
cellulose or xylan in feed, which can be added to feed as a feed additive to improve the ability of animals or
digest and utilize feed, promote animal appetite and improve the quality of animal husbandry products. It can solve
the bottleneck problem of low efficiency and high cost of cellulase hydrolysis.
2. The pSIP403-PUS-xynA (Bifidobacterium) series
2.1 Constructed plasmids
Firstly, we designed the pSIP403-PUS-xynA. We let the xynA to light the plasmid pSIP403-PUS to obtain the
pSIP403-PUS-xynA plasmid.
Figure 11. The map of plasmid pSIP403-PUS-xynA.Figure 11. The map of plasmid pSIP403-PUS-xynA.
Next, the xynA and pSIP403-PUS plasmids were digested with HindIII. Figure12 is shown that the plasmid
pSIP403-PUS-xynA was successfully constructed.
Figure 12. The results of enzyme digestion identification of pSIP403-PUS-xynA
M:5000bp
1:pSIP403-PUS-xynA (HindIII digestion)
2:pSIP403-PUS-xynA (Undigestion)
M:5000bp
1:pSIP403-PUS-xynA (HindIII digestion)
2:pSIP403-PUS-xynA (Undigestion)