| CPU_Nanjing - iGEM 2022

Integrated HP

1. Enrollment: to build a diverse team

    Before we officially started this year's journey, members of the original line-up gathered together and exchanged ideas of launching the project. Since we need members with various skills to fulfill the ultimate goal together, an enrollment program was designed to establish a diverse team.

    To achieve that, an offline interview was organized to absorb team members. Before holding the interview, we discussed the recruitment plan with our PI and prepared a series of materials. During the interview, we met friends with different backgrounds and communicated with them from different perspectives on the topic of synthetic biology. Their professional performance truly impressed us.
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    As our project progressed, we came to a complete agreement that recruiting more members was necessary so as to create more possibilities for our mission afterwards, including building our Wiki and diversifying our Human Practices. As a result, an offline campaign was organized to expand our audience. We received a considerable number of resumes within a short period of time, from which we selected the rest of our team members.
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    Finally, we successfully built a diverse team with members majoring in biopharmaceutics, statistics, pharmaceutical analysis, business administration and so on.

2. Inspiration: phosphorus on terrestrial planets

    At the beginning of the competition, we organized a series of brainstorms to discuss what to do this year.
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    The location is the Biophysical Innovation Lab in the Faculty of Science, which houses some cool equipment including a 3D printer and an astronomical telescope. When we look into the stars through the telescope, we couldn’t help wondering whether humans will be able to migrate to terrestrial planets. Suddenly, Elon Musk’s Mars Colonization plan flashes through our mind. As the CEO of both SpaceX and Tesla, Musk is a space exploration fanatic as well as an electric automobile magnate. Tesla has built a gigafactory in Shanghai which realized an astonishing output of 450,000.
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    Instead of the impressive appearance and high-tech interior which make electric cars unique, the team members are more concerned about their battery life. Besides metal elements such as lithium and iron, phosphorus, which we learned in biology classes, is also involved in battery manufacturing. “If phosphorus also exists on other planets in the universe, will it be possible to build electric cars in outer space?” The team members operating the astronomical telescope continued, “You know what? I do wish to know what form it would be if there was phosphorus on the moon.” In this way, the entire team started to focus on the phosphorus on terrestrial planets.
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3. Determination: manufacture phosphate for interstellar migration in the future

    In order to comprehend the profile of phosphorus on terrestrial planets, we conducted a web search as well as literature mining. As far as phosphorus is concerned, there is no shortage of it on these planets, but it is more in the form of phosphite, hypophosphite, or even schreibersite. This is because they are difficult to be further oxidized, even in an oxygen-rich environment like Earth's atmosphere. At the same time, we learned that these above-mentioned compounds are toxic to most Earth's creatures for they are unable to metabolize phosphorus in low oxidation state directly.
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    So, what's the form of phosphorus on the Earth? Based on the literature research on this issue, we found that most of the phosphorus on the Earth today is in bioassimilable state (i.e., phosphate with P of +5 valence), only a small amount of them stays in the state of +3 valence. Due to the existence of phosphite, some bacteria still retain metabolic pathways capable of oxidizing phosphite (P, +3 valence) to phosphate (P, +5 valence). This process is catalyzed by phosphite dehydrogenase. Therefore, we considered constructing genetically engineered strains by means of synthetic biology in order to oxidize phosphite and to manufacture phosphate on terrestrial planets.
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     However, we haven't confirmed the value of our project aside from technical feasibility. We thought that the value of this project essentially depends on the basic needs of life after interstellar migration and the importance of phosphate in meeting such needs. A questionnaire might be the best way to get to the bottom of this issue.

    Therefore, our Human Practice team decided to start with a questionnaire survey, but before that we had to figure out how to design a questionnaire so that we could obtain the true thoughts of the respondents. For this purpose, we consulted Dr. Xingxia Chen (the senior engineer at School of Psychology and Cognitive Science, East China Normal University) online. After expressing our confusion, she strongly suggested that we design some macroscopical questions about interstellar migration from the perspective of the interviewees, and the subconscious answers gained are their real thoughts.
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    As to interstellar migration, the most concerned are the fundamental aspects of survival: water, oxygen, food and clothing. Based on that inspiration, HP sub-team released a questionnaire on the interstellar migration online and offline, whose respondents were mainly students from the United States, the United Kingdom, Malaysia, and various regions in China. Statistical analysis of the results showed that the most concerned aspects are still the fundamentals of life even in such a technologically advanced world.
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3.1 Phosphate and crops: a visit to Dr. Zhang’s experimental fields

    To fully comprehend the role of phosphate in agriculture production, we paid a visit to Changxing County in Huzhou City, Zhejiang Province, where we visited Dr. Zhang from the School of Life Sciences of Zhejiang University. He has been managing a completely phosphate-free experimental field for years to test the effect of phosphate on rice yield. According to his abundant experience, he told us that the plant biomass, meaning height and width, are determined by nitrogen and potassium, while phosphate decides whether the plant can reproduce or not. In another word, no phosphate in, no crops out.
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    When we were about to leave, Dr. Zhang generously gave us some phosphate-free soil for our further use in later experimental tests.

3.2 Phosphate and textiles: a visit to Jiangsu Institute of Textile Product Quality Supervision and Inspection

    Dr. Jierong Jiang, vice director of Jiangsu Institute of Textile Product Quality Supervision and Inspection, warmly received us. We learned from her that the production of natural fibers from biological sources used in textiles, such as cotton, hemp, silk and wool, is obviously dependent on phosphate. We would have to turn to petroleum if there is no phosphate because over 90 percent of chemical fiber comes from oil. In addition to producing raw materials, phosphate is also required by processes such as printing and dyeing, which again emphasizes the role of phosphate in textile industry.
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    To sum up, the feedbacks obtained by Human Practice inform us that, on terrestrial planets, it is necessary and extremely meaningful to realize phosphate bio-manufacture.

4. Technological feasibility: extremely challenging but feasible

    After confirming the value of the project, the team also needs to confirm the biotechnological feasibility. For this purpose, we visited Dr. Xin Wang from the Faculty of Science, China Pharmaceutical University, whose main research interest during PhD was the production of polyphosphate with Citrobacter freundii as the chassis. He told us that though it is technically feasible from the perspective of synthetic biology, this project is still extremely challenging. The reason lies in the small amount of phosphate required in the growth of bacteria and that phosphate in the process of ATP regeneration can be recycled. That means even if phosphite dehydrogenase is overexpressed in bacterial cells, in theory, they will not continuously oxidize environmental phosphite since it’s futile to produce more phosphate than needed. Therefore, coupling phosphite oxidation to other metabolic pathways in order to make the bacteria stay “phosphorus starving” may be a choice worthy of consideration. In this way, it’s possible to force the bacteria to “manufacture phosphate” continuously.
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    After confirming the technical feasibility of the project, our lab members begun their work. As the experiment progressed, our team conducted a brain storming again about "possible problems of implementing the project on terrestrial planets". We discovered that the phosphorus element was often involved in energy metabolism of bacteria. For heterotrophic bacteria, such as E. coli, the energy required for life activities was essentially derived from the assimilation of exogenous carbon sources. Glucose is used in the lab, but providing assimilable carbon source for bacteria on terrestrial planets is another crucial problem to solve.

5. More aspect: comprehensive consideration based on the terrestrial environment

    In order to deal with the problem of supplying carbon source for engineered bacteria on terrestrial planets, we went to College of Resources and Environment Sciences, Nanjing Agricultural University for help. There, we visited Dr. Xiaomeng Wang whose research orientation is biogeochemical cycle of elements and the relationship between nutrients and water blooms. We described the problem we were facing in detail and she quickly got our key points. She suggested that the blue-green algae, an autotrophic bacterium capable of utilizing solar energy to convert carbon dioxide into organic biomass, may worth a try. The blue-green algae has an origin of around 3 billion years. Their photosynthesis ability contributed to the most critical event in the evolution of the earth: the oxidation of Earth's atmosphere. She continued, “Nevertheless, feeding the blue-green algae toE. coli is a problem for you to solve, because no one has ever done this before.”
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    To cope with this challenge, we returned to the lab again and worked in Partnership with NJTech_China. During our collaboration, we found a suitable solution and verified its validity together.

6. Project landing: scale up

    Since we aimed to manufacture phosphate, HP members organized a discussion with other teammates about how to obtain the final product after the overall feasibility was initially verified. All members agreed that at least a bench-scale test should be performed. As we need corresponding devices to simulate production process, we went to Nanjing Organic Glass Factory and visited manager Zheng, who has been long dedicated to handcrafting small production equipment for universities and research institutions. We communicated with manager Zheng about the design concepts and application requirements of our Hardware. Soon we obtained a prototype of Hardware which integrated parts handcrafted by workers and modules (such as solar panel, battery and heater) built by our team.
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    At last, we conducted a bench-scale production based on our Hardware and successfully manufactured phosphate using phosphite as the substrate. Now we could say that our project is landed.