This year we set up four parts for the project, two of which are basic parts and two are composite
parts:
Name |
Type |
Description |
Designers |
Length |
BBa_K4249000
|
Coding NcEgt1 |
The biosynthetic gene for ERG production from N.crassa that catalyzing the first
enzymatic step
|
Douglas B.Kell and Irina Borodina |
2631bp |
BBa_K4249001
|
Coding CpEgt2 |
The biosynthetic gene for ERG production from C. purpurea that catalyzing the 2nd
enzymatic step
|
Douglas B.Kell and Irina Borodina |
1581bp |
These two parts are gene coding sequences, one encodes egt1 that from Neurospora crassa, a
filamentous
fungus that produces ergothioneine, another encodes egt2 that from ergot fungus Claviceps
purpurea, the
first strain that was found to be capable of producing ergothioneine.
Egt1 is a nonheme iron enzyme that could simultaneously catalyze two reactions, including the
methylation of
histidine to hecynine and the conversion of hecynine to hercynylcysteine sulfoxide. After that, another
enzyme called Egt2, hercynylcysteine S-oxide lyase, will combine with hercynylcysteine sulfoxide
to form
EGT.
Name |
Type |
Description |
Designers |
Length |
BBa_K4249002
|
Expression cassette |
The expression cassette carrying an ADH1 promoter, NcEgt1 coding sequence and an
CYC1 terminator
|
Wenxin Wang |
3636bp |
BBa_K4249003
|
Expression cassette |
The expression cassette carrying an TEF1 promoter, CpEgt2 coding sequence and an
CYC1 terminator
|
Wenxin Wang |
2273bp |
These two parts are the gene expression cassettes corresponding to the above two genes respectively. The
expression cassettes both carrying a promoter, gene coding sequence and a terminator.
In order to enable the engineered strain to produce ergothioneine in a more sustainable way, we chose
the constitutive promoter to introduce the expression of the two heterologous genes. According to
literature references and existing resources in our laboratory, we finally chose apply pTEF1 and pADH1
to our work, they are commonly used for metabolic engineering of yeast, more importantly, both of them
could provide relatively high expression values of genes, which means we could get more production of
ergothioneine in the end.
Transcription terminators play a role in terminating the progress of gene transcription, and are thus
essential elements in the gene expression. For both gene expression cassettes, we chose to apply tCYC to
our work.
Here, these two gene expression cassettes were added with about 0.5kb homology arms on both sides when
they were used as the linear integration fragments.
For better use by future iGEM teams, here are some tips. During the experiment, we found that some
regions of the promoter sequence templates are rich in GC residues, which tend to fold into complex
secondary structures and might not melt during the annealing phase of the PCR cycle. Also, the primers
used to amplify GC-rich regions often have a high capacity to form self- and cross-dimers and a strong
tendency to fold into stem-loop structures that can impede the progress of the DNA polymerase along the
template molecule. Therefore, instead of PCR method, we obtained the gene expression cassettes by enzyme
digestion.
van der Hoek, S. A., B. Darbani, K. E. Zugaj, B. K. Prabhala, M. B. Biron, M. Randelovic, J. B. Medina,
D. B. Kell and I. Borodina (2019). "Engineering the Yeast Saccharomyces cerevisiae for the Production of
L-(+)-Ergothioneine." Frontiers in Bioengineering and Biotechnology 7.