As the final purpose of our decursin biomanufacturing is CIA treatment, when designing the project, we wanted to approach this topic in the most sensitive manner as possible. To understand the problem and the available solutions today, we contacted different associations, consulted with experts and talked to patients. All of this input emphasized the importance of our initiatives and values that guided us throughout the project.
Human Practices
Hair loss following chemotherapy treatments is a phenomenon that occurs to more than 60% of patients[1] . Beyond the physical
difficulty, the loss of hair is accompanied by great mental stress. Many patients affirm that losing their hair
makes coping with the disease much harder. Since our project deals with a very sensitive topic, our human practices
focused on the question of how our project can contribute to the community and how can we work together to create a fitting solution to the problem.
In terms of understanding our impact on society, we contacted different associations not only to hear and understand
the issue firsthand, but also to offer our help on various occasions such as organizing a hair donation event and a pool
party for the children's oncological department.
To comprehend the psychological aspects on a much deeper level, we contacted Dr. Jawdat George Eid, a former senior
social worker in the oncological department of Rambam hospital, and published a survey among patients and patients in
recovery.
All that gathered information helped us shape our project in the direction it is today.
Integrated Human Practices
Our vision is to make Angel Roots an off-the-shelf product that will be an exclusive solution for patients undergoing
chemotherapy, as well as to promote future research regarding decursin and its effects. For this reason, we consulted
with top experts from both the industry and the academy to understand which areas we should focus on in order
to reach the full potential of our project.
Our talk with Dr. Eid shaped the way we communicated our project to potential clients. We changed our phrasing
and made sure to address them with the required sensitivity when compared to a more scientific background. For future
implementation and large-scale manufacturing, we contact “Shamna” company to understand the related regulation and standards,
and as a result of the conversation, we identified a need for a model to assess the validity of our biomanufacturing
system.
We toured “Pharmaseed” Ltd. which introduced us to the process of clinical screening and offered to perform the screening
for us. In addition, we understood we must prioritize the production of the molecule and the research of its molecular
mechanism (see efficacy assays).
As we continued consulting with different specialists, we had to let go of planned directions and make compromises accordingly,
for instance, our choice to proceed with HPLC for decursin detection and giving up on previous ideas such as NMR and
lyophilizer, thus closing the loop between the designed and the desired.
Engagement and Integration
Dr. Jawdat George Eid
Contribution
Dr. Eid described from his experience the mental difficulties that children and youth experience following hair
loss, and how this affects their self-image and coping with the disease. Dr. Eid stated that our project is a very
important initiative, especially for adolescent children, for whom this is a sensitive issue. The child
must make a difficult transition between the old, normal routine and a new routine that includes painful treatments,
pressure on the family, and a new self-image. We asked him how he thought the product
should be presented to patients and he emphasized that nothing should be guaranteed in this area. Dr.
Eid gives lectures in nursing courses, in which he teaches how it is taboo to make promises to patients that cannot
be kept. He explained to us that in such situations the patient clings to every possible promise and hope, and if
he experiences disappointment from a medical/scientific factor, this may lead to a severe regression in treatment.
Therefore, he recommends presenting the product in a modest way, which presents the pros alongside the cons and gives
the patient room for control. Not to present the product as an absolute solution because there is no absolute truth
in this field.
“Finding a product that will help prevent hair loss affects not only the hair but also the mental stability, the
withdrawal and development, the daily functioning - this is an important tool that will allow the patient to feel a
certain control over his life” J.G.Eid
Implementation
Following our conversation, we learned about the importance of our project and the necessity of such a product,
and how to make it approachable for patients. By doing so we alternated our survey and rephrased it to be more
suitable for patients and those in recovery. We updated our approach towards the end product and centered
on its use as a chemotherapy-induced alopecia product.
Hair Donation Event
One of the most common solutions for hair loss is wigs. In Israel, every cancer patient who loses his or her hair
due to chemotherapy treatments is entitled to receive a wig for free. But did you know that it takes at least
7 braids to make one wig?
As part of our desire to understand the problem and to contribute to the community, and to the cancer
patient in particular, on June 15th we organized a hair donation event on the Technion campus. The event was held
in collaboration with "Zicharon Menahem" association which works for cancer patients and their families.
With the help of three amazing hairdressers that came voluntarily, we managed to collect dozens of donations sent
to the association.
We were touched to find out that the event reached not only undergraduate students but also included donors from graduate
school, faculty members, and even people from outside the Technion who came just to donate their hair.
Each of the donors received a certificate of recognition for their donation and a small gift bag that we prepared especially
for them. Beyond the hair donations, the event helped us raise awareness of the issue of hair loss as a result
of chemotherapy, and how the existing solutions are only partial and there's a need for new solutions.
Larger Than Life
After the hair donation event, we realized that help from a distance is not enough, and to understand the issue more
deeply, we must meet with the patients themselves.
On August 28th, members of our group joined the charity association “Larger than Life” in organizing a pool party
for families facing pediatric cancer. We believe that such events not only provide families with the opportunity
to step away from the white walls of the hospital but can also serve as a connecting and supporting platform, where
parents and their children meet people facing similar difficulties.
During this day we met and heard stories of strong families, which gave us some insight into their life.
Survey
To verify that our project is necessary and contributes to the world, with the advice of Dr. Eid we wrote
a survey for cancer patients and those recovering. The survey consists of 23 short questions, regarding the feelings
accompanying hair loss, the self-image following CIA, the opinions on the products that exist today, and the need
for a new product.
It should be noted that because the survey touches on a sensitive topic and population, we had difficulty conveying
it to the target audience and reaching a statistically sufficient number of people, which represents the entire community.
Therefore, the following survey will represent the data collected from seven cancer patients.
The majority of respondents testified that hair loss due to chemotherapy has a great impact on the disease's difficulty and its significantly affects their mental state.
Additionally,
more than half of the respondents believe that the solutions that exist today for hair loss after chemotherapy are
ineffective and affirm that if there was a product that prevents hair loss due to chemotherapy, they would want to
use it.
Gathering all this information we were able to reach the relevant understanding regarding the need for our
project, the problem we are trying to solve, and the cooperation required of us with the intended population
They explained that there are currently two main methods for extracting from plants: steaming and pressing. The methods
vary from plant to plant and depend on the percentage of oil. From the discussion, it emerged that the extraction
process is accompanied by depreciation, which harms the environment, and its disposal is accompanied by associated
costs, which are added to the costs of the raw materials, and the ongoing growing costs of the plant. Hence, the
existing extraction processes in the market are polluting, and expensive and don't necessarily address the problem
of low efficiency that exists in plants such as Angelica gigas.
In addition, in extraction processes and in particular, in refining processes, it is difficult to maintain the medicinal
properties of the extract. This makes, plant extracts not always suitable for such products. Another issue that came
up in the conversation is the issue of standardization and how it is carried out in practice. In the conversation
with Rachamim, we realized that standards are completely different between the food sector, cosmetics, and medicine.
Implementation
The coversationwith Shamna helped us understand the regulatory mechanisms that exist in the western world, and what
we'll be required to do in the field of standardization for the synthetic decursin we will produce.
Yaki raised an important question - why are you trying to mimic nature? What's the point of trying to do something
that nature already does?
From his questions, we understood how the project was perceived by the industry and stakeholders. Yaki, as
an industrialist, was concerned about production costs. In his opinion, even a production that "imitates" nature
will require additional costs in energy, raw materials, and people. For him, this is an economic and not a technological
question. Following Yaki's concern as an optional stakeholder, we concluded that a feasibility model was required,
which would be an essential component of the work plan and would justify the viability of the project. Read
about it in the Proposed Implementation page.
Our meeting with Yaki Harel and Rahamim Eliyahu
Visit at Pharmaseed
Contribution
When we set out to biomanufacture decursin, we had a clear vision in mind (learn more in Proposed Implementation page):
enabling the development of novel treatment strategies that make use of decursin. This meant thinking beyond manufacturing
and led us to seek feedback regarding regulations, safety requirements, and screening processes. With the help of
former iGEMer,
Ricarina Rabinovitz, we set up a meeting with Pharmaseed which included a tour of their lab and a
meeting with Dr.
Itschak Lamensdorf who founded Pharamaseed in 2003, and today serves as a chairman and a consultant to
the company.
Implementation
Pharmaseed shared from their experience on the path of new drug discovery. We quickly learned that biomanufacturing
is only one side of the picture, and future strategies that include decursin would have to further research it's
molecular mechanism. This was quite unexpected for us because while our team is on the biomanufacturing track, we
understood that it’s impossible to divide science to different separate tracks, as synthetic biology integrates various
disciplines. This helped us learn about the process of new drug approval, a core part of our proposed implementation.
Furthermore, Pharmaseed offered their biological screening services as an opportunity to collaborate, while we can
work on the biomanufacturing aspect.
visit at Pharmaseed
Prof. Ayelet Fishman
Contribution
We were advised to use HPLC because every molecule involved in our pathway (decursin/decursinol, umbelliferone, 7-demethylsuberosin,
and marmesin) is aromatic and will be suitable for separation using this technology.
Implementation
We took that information and conducted a literature survey to find existing protocols for using HPLC for measuring
our metabolites. Once we had an initial direction, we worked with Fishman's lab back and forth to finalize HPLC program suitable for
our samples. You can read more about our measuring process here in the Results page.
Dr. Omer Yehezkeli
Contribution
We approached Dr. Yehezkeli to assist us with finding an assay to measure produced decursin. We were offered to use NMR which will be faster
than HPLC. We were also given input about how should we extract our product from the bacterial culture.
Implementation
Eventually, after discussing the matter with several people from the Yehezeli lab, we decided not to use NMR mainly
because using it require larger concentrations than we anticipate, it's noisier in comparison to HPLC and we were
able to have a working HPLC program that produces distinct peaks.
Dr. Ammar Yousef
Contribution
Our initial concern was that the sample was in a water solution, which isn't HPLC-graded, which results in measurement noise.
That's why we used a lyophilizer to freeze-dry the water in the sample, but after running the HPLC, no peaks were
obtained.
Dr. Yousef explained to us that freeze-drying a solution may also dry the metabolites in the solution if they have
dissolved. Also, the salts in the water won't evaporate and their concentration will increase. He suggested we run
the sample and subtract the baseline of water alone. Also, he suggested to try and extract the metabolites using
chloroform.
Implementation
Dr. Yousef's help advanced our project and especially the Proof of Concept team in developing appropriate protocols
suitable for our metabolites. (see- Protocols page )
With his insight, we were able to overcome the setbacks in our project and came to the conclusion that a different
analytical tool is needed (see Measurement page).
We decided to address this issue and provide an alternative method using the tools available to us in the synthetic biology framework.
This resulted in the development of a whole new aspect in our project: the OraCell measurement assay.
We propose a new application, which provides a way to quantify decursin. This was achieved by engineering a pathway that exists in mammalian cells.
What started as a measurement assay for decursin, could be used by other teams working on the same pathway, or even to mass screen potential new drugs.
Dr. Aviv Lutaty
Contribution
An integral part of our project was the development of a stable cell line with the Luciferase reporter gene for detecting
and quantifying decursin. The development of this assay included transfection of a plasmid which is normally detected
using fluorescent activated cell sorting (FACS). This led us to consult with Dr. Aviv Lutaty. We approached him following
the transfection of our mammalian cells with a plasmid that contained our bioluminescent protein, Luciferase. Typically,
a transfection of this nature is done with a fluorescent protein which is easily identifiable through FACS. However,
we chose the more accurate and sensitive bioluminescent protein as opposed to a fluorescent protein. This left us
unsure of how to isolate and detect cells that integrated the plasmid.
Implementation
Dr. Aviv Lutaty was very helpful in laying out a clear plan forward for the detection of Luciferase-expressing cells
utilizing single cell sorting, fluorescence measurements, and luminescence measurements.
Dr. Hila Ben David
Contribution
As we are looking forward to our project's future, we thought about how we should present the project and its regulation.
To overcome this issue, we consulted Dr. Ben David. She offered that we consider how we want to present our product
- our target audience should be healthy people with hair loss, and market it as a cosmetic product. This way it will
be easier to get approval - and the next step will be to advertise it as a treatment for CIA (after safety checks).
She suggested starting with the US market (when we want to advertise our product), even though their regulation is
more complex it will be easier after we get the approval to go to other markets (such as Israel etc.)
Implementation
That conversation helped us to understand better the regulation market and to think about how we want to change the
way we think about our product starting from now.
Dr. Galit Pravari
Contribution
Researching about the natural synthesis of decursin in plants taught us that the anabolic pathway
from umbelliferone to decursin contains three reactions. Two of them are enzymatic, while the third is a non-enzymatic esterification reaction.
We designed our plasmid system to contain genes encoding for the two enzymatic reactions. This meant that we still needed to find a way to
include the third reaction from decursinol to decursin in our process.
Galit suggested an optional mechanism that includes esterification reaction with an acyl halide and even offered to assist in us in performing
it in the wet lab.
Implementation
The reaction that was offered by Galit was the missing piece in our biomanufacturing process.
This reaction completes the pathway and yields the wanted metabolite decursin.
We plan on performing it experimentally with intentions to integrate it into our biomanufacturing process. Read more in our future plans page.
Professor Yuval Shoham
Professor Yuval Shoham is a researcher in the faculty of Biotechnology and Food Engineering in the Technion
Contribution
When designing our project, we wanted to focus on every step of the way from producing decursin in bacteria to the investigation if our final product would succeed in penetrating to the necessary depth. A part of this process included the modeling of scaling up our biomanufacturing process and its cost. To find out more, visit our modeling page
Professor Shoham assisted us in understanding how biomanufacturing projects are typically scaled up and the concerns and costs associated with this process.
Implementation
The biggest piece of advice we took from our conversation was the type of fermentation to be utilized. We
debated heavily between batch and continuous fermentation and after our discussion with Professor Shoham,
we realized that monetarily and efficiently, batch fermentation was the preferable choice and this is the
type we implemented in our model.
Dr. Jawdat George Eid
Dr. Jawdat George Eid is a former senior social worker at Rambam Hospital, who worked in the children's oncology department
for about a decade. He has a Ph.D. in education and social science, and he is the author of the children's book “Namoor
the little hero” which portrays the struggle of a boy losing his hair due to chemotherapy.
Zicharon Menachem is an organization that provides support for young cancer patients and their families. Over
53784 children have been supported by them since 1990 and one of their main activities is collecting hair
donations in cooperation with hairdressers across the country.
The Larger Than Life association was established in 2000 with the aim of improving the quality of life and well-being of children with cancer and their families throughout the country, regardless of religion, gender or nationality.
Since our project touches on sensitive issues, we created a survey in order to gain a deeper understanding of the psychological needs and effects of CIA on cancer patients. Through the survey, we tried to understand the views towards today’s products; how much our project is needed and the good it will do for the world and we learned about the preferences of the patients in the final product, both in terms of the application and the economic aspect.
Today, decursin is produced from an extract that comes from the roots of the Angelica gigags plant[2]. To understand
the world of plant extraction and the challenges inherent in it, i.e. whether our solution can overcome these difficulties,
we turned to Yaki Harel and Rahamim Eliyahu from “Shamna” - an Israeli company for extracting oils from cold pressed
plants.
Pharmaseed is Israel's largest GLP-certified pre-clinical CRO specializing in translational and regenerative studies
with large expertise in Stem cell and cellular therapeutics, Angiogenesis, Cancer, Inflammation, CNS, Pain, Metabolic
Disorders, Toxicology and Medical Devices
Prof. Fishman's lab focuses its research on biocatalysis, exploitation of enzymes and whole cell systems for the synthesis
of drugs and nutraceuticals, directed evolution of enzymes, immobilized enzymes, and enzymes in organic solvents.
We consulted her regarding ways to prove that we indeed manufactured decursin.
Dr. Yehezkeli's lab combines nanomaterials and enzymes to create biohybrid systems and focuses on enzyme based photochemical
and electrochemical devices, sensing applications, photocatalysis, and biocatalysis.
After choosing to use HPLC, we tried to understand how to adapt the method to our samples. For this purpose, we consulted
Dr. Ammar Yousef, a QC specialist from “Hallura” company regarding the procedures. Dr. Ammar is a specialist
in developing methods for the following: GC, HPLC, UPLC, and LC-MS Triple Quad.
While looking for alternatives to HPLC as a way to measure the decursin yield, we found out that many iGEM teams came up with their own unique measurement methods.
Inspired by this, we looked for ways to manipulate existing pathways in mammalian cells to measure the presence of decursin.
Dr. Hila Ben David is a CTO at Nextar Chempharma Solutions Ltd. formerly director of The National Public Health
Laboratories, Israel Ministry of Health.
Professor Yuval Shoham is a researcher in the faculty of Biotechnology and Food Engineering in the Technion,
specializing in protein and enzyme engineering, combining fermentation technology, physiology and gene regulation.
Human practices were integrated into every part of our project, from the first brainstorming session to the last experiment in the lab.
To demonstrate this, we use the iGEM project cycle as a model.
1. Build a diverse team
Our team is the perfect example of diversity, it is composed of 12 people from different backgrounds and ethnicities, which was beneficial especially in the education and public engagement activities that were done by the team. for example, we were able to translate our educational content to multiple languages making it more accessible for people from different countries. Additionally, our team members come from different faculties, such as Biotechnology and Food Engineering, Bio-medical Engineering, Computer Science, and Medicine. Owing it to our diversity, we were able to come up with unique ideas and develop tools to implement them, like creating an educational app using knowledge of programming languages or designing DNA puzzle, using knowledge of SolidWorks, computer-aided engineering applications. Another example is the bioinformatics background of some of the team members that enabled us to utilize modeling tools and software with minimal complications.
2. Explore context
Each team member reached out to different communities for the purpose of exploring ways in which synthetic biology could be used to solve real-life problems. And by listening to the stories of our acquaintances from an assortment of backgrounds, we stumbled upon one story that inspired us; our teammate’s neighbor who is battling cancer, that caused her to also suffer from chemotherapy-induced alopecia (CIA). This is where our project’s idea stemmed from, and we made it our mission to tackle the difficulties that chemotherapy patients face worldwide. To understand the problem on a deeper level, and increase our impact on society, we contacted different associations and talked to experts from the field. This allowed us to offer our help on various occasions and get involved in the community we were trying to impact.
3. Brainstorm Broadly
It was clear to us that the impact we wanted to have on this world was to tackle the distressing side effects of chemotherapy that cancer patients face worldwide. To gather evidence about how our work will affect the world, we first wanted to grasp the whole picture of difficulties patients face and the problematic aspects of solutions existing today. Therefore, we planned activities like a hair donation event and volunteering with “Larger than Life”, a charity association helping families facing pediatric cancer.
4. Document the progress
Each meeting was properly documented throughout and afterward. To ensure that the feedback collected from different stakeholders and the conclusions were not biased, we aimed to reach as many advisors as possible from different fields, that are independent of one another, starting from a social worker talking about the emotional aspect of the discussed problem and all the way to manufacturing companies talking about project implementation. Moreover, it was important to us to document all our meetings and activities throughout or straight after the events themselves to ensure close-to-reality descriptions.
5. Integrate insights
The approach that led us through the project was that concerns or objections to our ideas are not constraining, but rather the moving force of the project, allowing us to see the weaknesses and improve them. For instance, concerns that were raised from the meeting with industrialists showed us the need for designing our feasibility model. From a human practice standpoint, we received appropriate guidelines from experts for approaching the sensitive issue of CIA. Another topic that occupied a large portion of our project was our new measuring tool – OraCell, which stemmed from the observation we had when reviewing previous and present iGEM groups, and their need for a measurement tool as an alternative for HPLC.
6. Close the Loop
As we continued consulting with different specialists, we had to let go of planned directions and make compromises accordingly. For example, we had to give up on previous ideas such as NMR, lyophilizer, and HPLC as part of our measurement plans, and after callbacks with different stakeholders, we came up with our own measurement tool: The OraCell.
7. Present evidence
To see how all meetings and activities are held outside the lab to support our safety, ethical, or technical
decisions, follow the link to the Human Practice chapter.
8. Connect and Share
The initial motivation for our project to begin with, was offering solutions to the problem of chemotherapy
induced hair loss. We chose to tackle this issue by the means of biomanufacturing metabolites for future drugs.
During our HP work, we quickly learned about the part of biomanufacturing in the path of new drug discovery. This
new understanding meant changing our perspective, as our work focused on enabling this process. This raised new
questions regarding regulations, and what is needed for decursin to be integrated in commercially available therapies.
An example of that would be a possible future collaboration with PharmaSeed which offered their screening services.
As we have many future plans regarding our project (Proposed Implementation page), there is no doubt we will need
to seek for further collaborations with business and academic partners to achieve our goals.
Read Collaborations page for more information.
9. Carry it forward
As mentioned in the Connect and Share chapter, we believe in the importance of proper and detailed documentation,
therefor we emphasized documenting all the protocols and designs used throughout the project.
Moreover, we made sure to document our failed attempts and our debugging processes in our synthetic biology work,
to provide troubleshooting tips for future iGEMers (Engineering Success).
References
Rossi, A., Fortuna, M. C., Caro, G., Pranteda, G., Garelli, V., Pompili, U., & Carlesimo, M. (2017). Chemotherapy‐induced alopecia management: clinical experience and practical advice. Journal of cosmetic dermatology, 16(4), 537-541.
Method of extraction decursin and decursinol angelate from Angelica gigas, Nakai (KR100509843B1). (n.d.). KR. https://patents.google.com/patent/KR100893779B1