Integrated Human Practices

Our Project for iGEM 2022

Stakeholder Chart
Power, Interest Score of Various Stakeholders


Addressing risks:

  • Technology risk: Talked to Prof. Suraishkumar to ensure efficiency and cost-optimization in the reactor, Dr. Bhaskar Kura to understand how much the proposed technology contributes to sustainability, and Bangalore Bioinnovation Centre to go through the feasibility of developing the bench-scale of our design.
  • Customer risk and Learning risk: Talked to Ian Crosby, Bhaskar Kura, Anja and Irene Papst to understand the private and government sector views about our technology and the potential downfalls. 
  • Regulatory and Compliance risks: We have made efforts to reach out to relevant Government authorities. Policymakers
  • Team risk and Sponsor risk: If we are successful with a proof of concept and a bench-scale model, Sanjay Jani from the Garage and Bhaskar Kura from the University of Orleans have expressed interest in helping us carry our project ahead into the commercial world. We will also ask iGEM Community for support.
  • Market risk: To the best of our knowledge, no such sustainable product exists in the market to address the issue. Our view of the urgency of the matter and the need for sustainable technology has resonated with Ian, Bharat, and Anja from GIZ. 

Building The Project

Our project kickstarted with inputs from the general public. To get an idea on the household usage of refrigerants we set-up a booth for a two way dialogue to interact with the families and hostelers living in and around our campus. A segment of the booth was to conduct a survey to map the number of refrigerators and A.C.s being used in these households, the awareness of people about the Kigali Amendement for the phase-out of harmful coolants, and the general disposal of appliances at the end of their lifetime. We received a good number of responses that helped us assess the possible increase in the coolants in the environment over the next decade. This was supported by a thorough research and literature hunt, described on our Homepage.

This led to us getting in touch with the coolant suppliers. We contacted companies in India, some in Delhi, Ahmedabad and a few in Bangalore and realized that the majority of these suppliers do not sell any of the gases phased out in the recent amendement.

The next task was to identify the sources of these emissions. A few of us realized that the A.C.s require consistent repair and refilling of these coolants, suggesting a leakage in the set-up. To confirm this, we reached out to local repair mechanics, namely:

    • DSPN Cooling Solutions, Malleswaram, Bengaluru
    • Breeze Air, Rajajinagar, Bengaluru
    • GS Electricals, Kaveri Nagar, Bengaluru 

Moreover, a visit to a foam reclamation centre startled us, as these plants do not work on capturing the coolant content before processing the foam. This made us realize that the capture and degradation of these gases is to be done at the end level of the pipeline, i.e., degrade the emissions before they release into the environment, leading us to work on the development of a Bioreactor and, in future, efficient MOF (metallo-organic framework chips) to capture these emissions at the leakage levels.

Interestingly, these emission amounts did not exactly add up to the humongous emissions that were observed in the environment recently. We went back to the surveys and studies talking about the various contributors to these halocarbon levels in the environment. There we realized that a fair share of these emissions come from the cold transport industry, mainly marine vessels. We tried contact shipping companies about this. We managed to talk to a couple of people, a technical engineer and a vessel head, posted in the sea for a period of 6 months and 18 months respectively for cargo transport. The conclusion derived from the conversation was that although leakage is rare on ships when deployed; detecting these leaks and fixing them takes up nearly 10 to 15 minutes, which is sufficient to add greatly to emissions happening all across the world. According to the International Chamber of Shipping, there are currently more than 50,000 merchant ships operating in the oceans. Again the development of capture tubes will effectively reduce the environmental addition of these halocarbons.

After developing a possible solution to the problem at hand, we went ahead and approached Mr. Ian Crosby (formerly the Head of Sustainable Development and Cooling, Sustainable Energy for All). He helped us orient the project in a sustainable manner and gave an elaborate insight on the upcoming increase in cooling electronics sales in India, and other countries across the world. He helped us bring out the point of circular economy in our project and accordingly we kept in mind to develop the bioreactor design to minimise waste as much as possible and the same bioreactor model can be repurposed in future if the requirement ever fades out.

To comment on the sustainability of the implementation, we appproached Dr. Bhaskar Kura and got inputs on how to section our project and better align with the UN sustainable development goals better by suggesting modifications to our bioreactor design. 

Zoom meeting iGEM x Bhaskar Kura
Meeting with Dr. Bhaskar Kura on sustainable development


We established contact with Mr. Unmesh Patil, (Member of Parliament, Jalgaon Loksabha Constituency). Provided his influential position as a policymaker, he could give us exact details of activities being carried out by various organizations. We presented him the loophole in the current policy and he applauded our efforts in identifying so. He further led us to Mr. Rajesh Patil, Commissioner of Pimpri Chinchwad, who is present at the implementation level. He suggested we reach out to the public and concerned authorities through media and education. We incorporated his suggestions into education segment of our project. Furthermore, we aired an hour long session on the All India Radio (AIR) Karnataka with Synthetic Biology and Climate Change to reach out to the public.

Anja Werntges from GIZ gave us inputs on the outlook of authorities regarding halocarbon destruction. The same concern was resonated by her colleague, Irene Papst, who said there is barely anything being done to ensure destruction of phased out coolants. Irene also provided us insights on how we could model our solution better and provided us ODS bank data that her team had collected.

Discussion with Irene
Meeting with Ms. Irene Papst, GIZ


Lab and Cloning

Our quest to develop a bacteria capable of degrading halocarbons started with a thorough literature survey wherein we discovered the work of Professor Lawrence P. Wackett, University of Minnesota. His work inspired the initial development of our project with the incorporation of the crucial synthetic component of the project, our hypoxic promoter!


We approached Professor Prashant Phale, IIT Bombay, whose inputs were very important for the initiation of lab work. We scheduled a meeting with him and received our chassis after a thorough discussion based on our requirements. He helped us with the culturing protocol and delivery of Pseudomonas putida. Not only our chassis, but our vector plasmids were supplied to us by SEVA (Standard European Vector Architecture) which was recommended to us by Professor Phale.

Discussion with Professor Prashant Phale
Meeting with Professor Prashant Phale


Professor Debasis Das helped us select our enzymes to be used in our construct. Once we had designed the flow of the project, the next on the list were our gene sequences, our promoter constructs, and the reporter assay. Dr. Rajasree KP, PhD, UV Lab, IISc was of great help while exploring the luciferase assay and its incorporation. We optimized our gene sequences with her help. We had a short meeting with T. Srinath, GenoPhe founder where we discussed improvements and troubleshooted minor lab problems. Apart from this, he conveyed to us the need to cite proper resources and patent options for our bioreactor model.

The contribution of Professor Wackett and Madison Bygd is indispensable. They helped us fix the problems with our assay set-up and suggested alternatives to the existing set-up we had, such as using teflon seals, which were very critical to prevent diffusion of the gases. He helped us figure out the possible mechanism of the enzyme action and degradation pathway.

Discussion with Professor Lawrence P. Wackett
Meeting with Professor Wackett and Maddy Bygd

Implementation

Once we laid out the plan of action for the entire project, we started working on the implementation of our Bioreactor. Dr. Ishaan Gupta, Associate Professor, Bioengineering department, helped finalize Pseudomonas putida as the working organism in the reactor. After regular visits to the facility at IIT Delhi, we understood the hardware segments and working models of bioreactors, which were crucial for developing the initial proposal of the model. 

Initial proposal of bioreactor had plans of co-culturing two microorganisms together. We approached Professor Samay Pande, MCBL, IISc to study the co-culture of bacterial and microalgal colonies. Due to little study on Pseudomonas putida and presence of harsh chemicals (namely halocarbons) alongside, we decided to drop the co-culturing idea for the bioreactor.

Once we started to structure the bioreactor more concretely, we approached Professor G. Suraishkumar who gave the final shape to our current Bioreactor model. The solid state bioreactor is a result of his inputs. With the help of his student, Ms. Sonal Omar, we refined multiple aspects of this model.

Discussion with Professor G. Suraishkumar
Meeting with Professor G Suraishkumar
Discussion with Sonal Omer
Meeting with Ms. Sonal Omar, Student of Prof Suraishkumar


Metallo-organic Framework (MOF): Regarding the framework and feasibility of the idea to capture halocarbons at the site of leakage using MOFs, we approached Professor Subinoy Rana, Materials Research Centre, IISc. He was able to help us with identifying the feasibility of implementing these structures. A follow up of this has been put on the Future Plans, under Implementation.

To get an entrepreneurial outlook for the implementation of our model, we visited the Bangalore Bioinnovation Centre (BBC) where we talked about the prospects of building a bench-scale of our idea. They appreciated our efforts and said they could provide lab space. We also visited a plastic recycling centre in sub-urban Bangalore. This gave us the motivation and data to model the economy of our bioreactor.

Team IISc at Bangalore Bioinnovation Centre
Meeting with Dr. Jitendra Kumar, Bangalore Bioinnovation Centre


Sanjay Jani: Site head, Microsoft Garage Bengaluru. We analysed the entrepreneurial risks associated with our project over a workshop. Further discussions with him helped us identify potential private sector stakeholders whose inputs might be important. We contacted Ian Crosby, Bhaskar Kura and Giz in the following few weeks.


Education and Communication

During AIIM, we identified intended audience by talking to Ms. Varsha Jaisimha, and Dr. Bitasta Das. From this point on, Professor Das has been a constant guide for our human practices activities, and has helped us curate our content.

We contacted Prayoga Institute of Education Research (PIER) and developed our education package focused on the rural population. The language was kept as simple as possible and was translated into the vernacular language, Kannada. Ms. Pratistha from PIER continuously suggested edits in the material over three cycles of edit and review. We finally prepared the material 'Sync' suitable for a general audience being introduced to biology and synthetic biology for the first time.

To make sure we succeeded with our goal on the comprehensibility of the material by general audience, we shared the material with our parents and close relatives and took their comments. This was incorporated to improve on the material on its parsability and comprehensibility. 

For a detailed cycle of: "reflect-refine-reinforce", check out Education


Other fronts

Before we landed on our current project idea, our team went through a rigorous brainstorming phase with a constant involvement of people from various backgrounds. One of the major project ideas we started off with dealt with designing aptamers to detect the venom from a snakebite and use these to administer anti-venom into the subject's body. We contacted Professor Kartik Sunagar, Centre for Ecological Sciences, IISc, and realised that the snake venom varies extremely in snakes, hence a specific aptamer design in the course of our project cannot be designed.
Talk by Mr. Gowri Shankar, a snake specialist during AIIM
Talk by Mr. Gowri Shankar, founder of Kalinga Centre for Rainforest Ecology


The extreme variation in the venom fascinated us and we took the opportunity to invite Mr. Gowri Shankar, a snake specialist during the All India iGEM Meet (AIIM) to deliver a talk on his work on conserving king cobras.