Part Collection


Overview

Early on in our project, from our human practices discussions, we found out the pBAD promoter from the araBAD operon inducible by arabinose. The wild type promoter is extremely long, so we decided to research possible optimisation strategies, more details can be found on the part improvement page.

We decided to take a combinatorial approach to the part improvement, testing out different combinations of improvement strategies we found. This led us to producing a library of new pBADs - our part collection. These all have the significant advantage of being much shorter, and have variable strengths and leakiness. Full details are available on the linked registry pages. Note that, as the Registry does not generally allow an entry with multiple sequences, we gave the sequence of pBAD_AP2 only as a representative (shows significant improvement), but all remaining sequences are also given below for completeness.

Level 0 Parts Table (P_BAD collection)

Name Type Description Registry no.
P_BAD AP1 Promoter Promoter induced by arabinose (activation) BBa_K4491007
P_BAD AP2 Promoter Promoter induced by arabinose (activation) BBa_K4491007
P_BAD AP3 Promoter Promoter induced by arabinose (activation) BBa_K4491007
P_BAD AP4 Promoter Promoter induced by arabinose (activation) BBa_K4491007
P_BAD AP5 Promoter Promoter induced by arabinose (activation) BBa_K4491007
P_BAD AP6 Promoter Promoter induced by arabinose (activation) BBa_K4491007
P_BAD AP7 Promoter Promoter induced by arabinose (activation) BBa_K4491007
P_BAD AP8 Promoter Promoter induced by arabinose (activation) BBa_K4491007
P_BAD AP9 Promoter Promoter induced by arabinose (activation) BBa_K4491007

Level 1 Parts Table (P_BAD collection)

For the characterisation of P_BAD promoters for part improvement in the backbone pJUMP27-1A, the following Level 1 parts is made

Identifier Promoter RBS CDS Terminator Registry no.
PB1 P_BAD_AP1 B0032 mVenus DT5 BBa_K4491100
PB2 P_BAD_AP2 B0032 mVenus DT5 BBa_K4491101
PB3 P_BAD_AP3 B0032 mVenus DT5 BBa_K4491102
PB4 P_BAD_AP4 B0032 mVenus DT5 BBa_K4491093
PB5 P_BAD_AP5 B0032 mVenus DT5 BBa_K4491094
PB6 P_BAD_AP6 B0032 mVenus DT5 BBa_K4491095
PB7 P_BAD_AP7 B0032 mVenus DT5 BBa_K4491096
PB8 P_BAD_AP8 B0032 mVenus DT5 BBa_K4491097
PB9 P_BAD_AP9 B0032 mVenus DT5 BBa_K4491098
PB10 BBa_K2442101 B0032 mVenus DT5 BBa_K4491099