Enzymes in metabolic pathways
As we all know, enzymes play an important role in the biological production of synthetic
biology.
And compared with general catalysts, enzymes outstand for high efficiency and specificity.
By introducing various enzymes into reaction systems and biological devices, we can produce many valuable products under mild external conditions or in living organisms.
And compared with general catalysts, enzymes outstand for high efficiency and specificity.
By introducing various enzymes into reaction systems and biological devices, we can produce many valuable products under mild external conditions or in living organisms.
Current problems for researchers
Usually, a complete biosynthesis or degradation pathway contains multiple nodes and multi-step
reactions.
In the process of study, researchers often find that there is no suitable enzyme that can be directly found in the database to catalyze the target reaction, or the catalytic efficiency of enzymes found is not high, which brings difficulties to the study of metabolic pathways.
In the process of study, researchers often find that there is no suitable enzyme that can be directly found in the database to catalyze the target reaction, or the catalytic efficiency of enzymes found is not high, which brings difficulties to the study of metabolic pathways.
Deficiencies in current software
At present, there are some software for calculating anabolic pathways. However, pathway
interruption often occurs when searching pathways containing unknown reactions.
In other software, only the structure of the compound structure is considered when predicting unknown reactions, which often leads to too many results and the difficulty in experimental verification so that the practical feasibility in experiment or industrial production is low.
In other software, only the structure of the compound structure is considered when predicting unknown reactions, which often leads to too many results and the difficulty in experimental verification so that the practical feasibility in experiment or industrial production is low.
MEI-Modified Enzyme Interface
Thus, our team developed MEI, Modified Enzyme Interface, to provide users with efficient enzymes
candidates that may catalyze the target reaction.
Our project is based on a similarity comparison algorithm. Through structural comparison of chemical reactions, we screen out potential enzymes from the database and output them in a user-friendly way.
Our project is based on a similarity comparison algorithm. Through structural comparison of chemical reactions, we screen out potential enzymes from the database and output them in a user-friendly way.
Benefits of MEI
Under the initial assumption of single-step reaction, we gradually added more factors to be
considered, such as the participation of coenzyme, the species of enzymes, the control of feed
ratio by considering the reaction rate through biodynamic knowledge.
By MEI, we hope to help users shorten the experimental time and find the desired enzyme more quickly.
By MEI, we hope to help users shorten the experimental time and find the desired enzyme more quickly.
Useful Link
Engineering
we have gone through several iterations of the engineering design
cycle through continuous investigation
Model
How did we collect data, build models, and set parameters to explain
our project
Proof of concept
We provided our software for many parties to test its feasibility in
practice
Human practice
How we had engaged with human practice and make adjustment to our
software