Contribution

Hardware

Bioreactor Manual
Materials:
  • L298N Motor Drivers
  • Jumper cables/electrical wires
  • Arduino Mega/Uno (depending on the number of motors you are wiring)
  • 12V Power supply
  • Arduino USB cable
  • 1.5 L Mason Jars
  • Fermentation kit lids
  • 3D printed Motor Fan
  • pH sensor
  • Oxygen sensor (Gravity Analog D.O. Sensor / Meter)
  • Oxygen pump
  • temperature sensor
  • 8 oz mason jars
How to Build: Cornell iGEM Bioreactor Manual

3D Bioprinter
3D Bioprinter Manual
Materials:
  • Makerbot Replicator 2
  • Gelatin - 3D printing
  • 3 and 20 mL syringes
STL Files:
Handheld Bioprinter
Handheld Bioprinter Manual
Materials:
  • 28byj48 stepper motor (x2)
  • ULN2003 motor driver (x2)
  • Jumper cables
  • Shaft coupler
  • Breadboard
  • Arduino Uno
STL Files: How to Build:
  1. 3D print the casing and the syringe pusher.
  2. Attach shaft coupler to the motor driver using a screwdriver
  3. Slide the syringe pusher onto the syringe pusher base of the casing.
    1. The base is the portion that protrudes from the back of the case
  4. Screw the threaded rod through the syringe pusher into the shaft coupler. Screw in place stepper motors into place.
  5. Load the syringes side by side into the bridge.

Electrical Part 1:

  1. Connect stepper motor wires to the motor driver.
  2. Use jumper cables to connect the IN1, IN2, IN3, IN4 pins to the 8,9,10,11 pins respectively.
  3. Wire the arduino to the breadboard.
  4. Incorporate push buttons onto breadboard to control alternation of syringe extrusion
Testing Protocol:

We designed the handheld bioprinter based on the comfortability and ease of use. This was tested based on how comfortable it was to hold the bioprinter and by printing an entire syringe of hydrogel. Based on our tests, the bioprinter could be held comfortably but couldn’t be fully enclosed within one hand. As such, we determined that we could optimize comfortability by rounding the edges to make it easier to hold on the sides.

We tested extrusion by determining if it could extrude the hydrogel smoothly and at a consistent rate throughout the nozzle. Speed could be adjusted through the code by changing the rate of revolution of the stepper motor. Tested at the fastest setting of 15 rpm, extrusion rate was 0.882 mm/s.

Line Test [1]:
  1. Load hydrogel into syringes and set up printer.
  2. Set timer
  3. Print hydrogel in a straight line
  4. Measure length

Accuracy and precision of the bioprinter was tested by printing sketches of sample bioart and comparing expected results to printed products. From this, resolution, precision, and accuracy could be determined.

Hydrogel Procedure
Overview

Due to its high water content, good biocompatibility, controllable mechanical properties, and biodegradability, hydrogels have received extensive attention in tissue engineering fields and additive 3D printing. 3D bioprinting systems, in particular, can create a construct out of a hydrogel containing live cells [2]. Controlling the properties of the bio-ink is one of the requirements of the bioprinting process. This can be accomplished by varying the types of base materials used to make the bio-ink in order to achieve the desired biological and physiological properties in various tissues. Our primary goal is to develop a range of hydrogels with different crosslinking times and ingredient ratios. And applying hydrogels to various syringes to test the best extrusion process. According to our experimental data, the properties of any bio- derived hydrogels can be easily predicted, and thus the printing time can be estimated.

Hydrogels

For the preparation of hydrogels, a novel method was proposed that uses water present in swollen hydrogels as a porogen for shape templates. Crosslinking gelatin with glutaraldehyde in an aqueous solution, followed by rinsing and washing, was used to create biodegradable hydrogels [3]. The aim of our work was to produce hydrogels with various properties. The following steps were used to create our gelatin and GA hydrogels:

  1. Use tin foil to cover the boiling water to reduce water loss
  2. Measure out a 3 wt% gelatin solution
  3. Dissolve the gelatin in the hot water
  4. Add a 2 wt% glutaraldehyde solution to the 3 wt% gelatin solution in the ratio you choose to make
    1. We tested various ratios of glutaraldehyde to gelatin
  5. After mixing both solutions, quickly pour the solution into the mold (petri dish)
  6. Let solution stand at room temperature for 12 hours to crosslink
  7. After crosslinking, move solution to a 4-degree celsius fridge for storage and further solidification
    1. This step has no time limit

Hydrogel Procedure

Human Practices

Resource Guide to Bio-Art Ethics

Through our interviews, we learned that ethics within the field of bio-art is an important topic. Therefore, we developed a resource guide that discusses the various ethical arguments and discussions that exist regarding the topic of bio-art. This guide was developed in an effort for us to reach our goal of opening up a dialogue about how combining art and science can lead to different perspectives on what power scientists or bio-artists should hold.

Bio-Art Ethical Discussion Slides

Bio-Art Ethical Discussion Slides These slides provide a framework for discussing the ethical implications of bio-art. These slides were developed for use during an outreach event with an older audience. Other teams interested in opening a dialogue about bio-art ethics will be able to use these slides as a basis for discussion.

Outreach Lesson Plan for Younger Audience with Hands-On Activities

This is an outline of a lesson plan that Cornell iGEM developed in order to engage younger students with synthetic biology and STEM in general through hands-on activities that tie together art and science. Since the materials and methods are inexpensive and accessible, other teams may use this lesson plan to develop activities for their own outreach events.

Guide to Starting a Bio-Art Lab

We have developed a guide that compiles all the resources and suggestions needed if a University or group of students/bio-artists are looking to create a bio-art lab at their institution. Though we could not set one up ourselves at Cornell University due to lack of funding and lack of lab space, we created this plan so that any iGEM participants who have the resources available can begin the establishment of their own bio-art labs.

Policy Handbook

For teams looking to analyze the policy surrounding their bio-art related projects, we created a policy handbook to help direct teams to the proper resources needed to conduct a thorough policy analysis.

Bioink Documentation



Overview

We are working to design a novel plasmid that synthesizes the bioink for our 3D printer. Using Gibson Assembly, we will combine the curli nanofiber parts Fibrin knob domain, Fibrin hole domain, csgC, csgE, and csgG with the chromoproteins BBa_K1033902, BBa_K1033910, and BBa_K1033922 (aeBlue, amajLime, asPink respectively). The combination allows for the colorful chromoproteins to be embedded within the curli nanofiber monomers that make up the gel. The complete curli nanofiber mechanism would contain two operons: csgAC and csgEG, with the chromoproteins fused onto the csgA alpha. Also part of the construct will be the inducible promoter BBa_K2042004, the double terminator, BBa_B0014, and the chloramphenicol resistant plasmid backbone pSB1C3 to get only E. coli colonies with the transformed plasmid growing in plates with chloramphenicol. All part numbers listed above can be found in the iGEM parts registry [4].

Basic Parts

Name Type Description Designer Length(BP)
BBa_K4322000 Coding Fibrin Knob Domain (Alpha) Abraham Sinfort 33
BBa_K4322001 Coding Fibrin Hole Domain (Gamma) Abraham Sinfort 384


Composite Parts

Name Type Description Designer Length(BP)
BBa_K4322002 Composite csgAα-asPink fusion protein with glycine-serine linker Abraham Sinfort 1395
BBa_K4322003 Composite csgAα-aeBlue fusion protein with glycine-serine linker Abraham Sinfort 1392
BBa_K4322004 Composite csgAα-amajLime fusion protein with glycine-serine linker Abraham Sinfort 1386
BBa_K4322005 Composite CsgA-α (CsgA-Fibrin Knob Domain Fusion Protein) Abraham Sinfort 588
BBa_K4322006 Composite CsgA-γ (CsgA-Fibrin Hole Domain Fusion Protein) Abraham Sinfort 1011

Sources

[1] O'Connell C;Ren J;Pope L;Li Y;Mohandas A;Blanchard R;Duchi S;Onofrillo C; (no date) Characterizing Bioinks for extrusion bioprinting: Printability and rheology, Methods in molecular biology (Clifton, N.J.). U.S. National Library of Medicine. Available at: https://pubmed.ncbi.nlm.nih.gov/32207108/ (Accessed: October 6, 2022).

[2] Mikula, K., Skrzypczak, D., Ligas, B., & Witek-Krowiak, A. (2019, May 25). Preparation of hydrogel composites using ca2+ and cu2+ ions as crosslinking agents - SN Applied Sciences. SpringerLink. Retrieved October 6, 2022, from https://link.springer.com/article/10.1007/s42452-019-0657-3

[3] Kang, H.-W., Tabata, Y., & Ikada, Y. (1999, June 17). Fabrication of porous gelatin scaffolds for tissue engineering. Biomaterials. Retrieved October 6, 2022, from https://www.sciencedirect.com/science/article/pii/S0142961299000368?fr=RR-2&ref=pdf_download&rr=727e21a7d98115cf

[4] Registry of Standard Biological Parts. (n.d.). Retrieved from http://parts.igem.org/Main_Page.