Parts

In this part collection which ranges from part number BBa_K4118000 to BBa_K4118008, we have successfully submitted nine basic parts to the Registry. The primary function of this collection lies with the DNA Nanostructure it entails. We have created a Nanostructure for each one of our targets (hsa_circ_0102533, hsa_circ_0005962, hsa_circ_0070354). Hence, we enlisted an H1/H2 probe couple for each target. Since all LDNs consist of the same linear scaffold, we enlisted one RCA domain, corresponding to a single repeat of the scaffold. Lastly, we enlisted the phosphorylated template and the primer from which the linear scaffold is produced through Rolling Circle Amplification. Since we aim for our technique to be implemented for detecting other circular RNAs in multiple diseases, this collection seeks to provide all the necessary info for the Nanostructure construction free-handedly.

Part Part Name Type Designed by Registry link
Part:BBa_K4118000 RCA Domain DNA Eleftherios Bochalis http://parts.igem.org/Part:BBa_K4118000
Part:BBa_K4118001 hsa_circ_0070354 H1 probe DNA Eleftherios Bochalis http://parts.igem.org/Part:BBa_K4118001
Part:BBa_K4118002 hsa_circ_0102533 H1 probe DNA Eleftherios Bochalis http://parts.igem.org/Part:BBa_K4118002
Part:BBa_K4118003 hsa_circ_0005962 H1 probe DNA Eleftherios Bochalis http://parts.igem.org/Part:BBa_K4118003
Part:BBa_K4118004 hsa_circ_0070354 H2 probe DNA Eleftherios Bochalis http://parts.igem.org/Part:BBa_K4118004
Part:BBa_K4118005 hsa_circ_0102533 H2 probe DNA Eirini Ntereki http://parts.igem.org/Part:BBa_K4118005
Part:BBa_K4118006 hsa_circ_0005962 H2 probe DNA Eirini Ntereki http://parts.igem.org/Part:BBa_K4118006
Part:BBa_K4118007 Phosphorylated template DNA Eirini Ntereki http://parts.igem.org/Part:BBa_K4118007
Part:BBa_K4118008 RCA primer DNA Eirini Ntereki http://parts.igem.org/Part:BBa_K4118008
iGEM University of Patras

University of Patras
26504 Rio, Greece

patrasmedigem@gmail.com

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